Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017830

Physical Location & Seq

Genomic Coordinates Forward (+)

31221450 .. 31223012

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCAAGTTCAGATCGGTTGTTTTCATCAATTCTCTTCTCTGGGTCATCGGGTTTCGTTTGAAATTTGAGTATGCGGTGGAAACAACAAGAAGGAAGATGAGGGGCAGGGTAACAACTAACAAGAAGGAAGATGAGGGGCATCGCATTTTGGTGGCTGCAATATTTAAGATTGGAAATAGCAAAGGTATGCCAGATATTCCTGATTATCTTTCCCATGATGCAAAGAATTTTGTGAGGCTGTGTTTGCAATGGAACCCATCTGAGCGTGCTACTGCTTCTCAACTGCTAGACCACCCTTCCATTAGAGAGCAAATGACAACAAGAAGTGTTGAAAACTATAGGTTTGTGGATATGAAGCAAGCTGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

125

Amino Acids

14.46

Weight (kDa)

9.86

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 100	9.8e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017830)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213001
rosa_laevigata	RLG00000000742 RLG00000013416
rosa_roxburghii	Rroxscaffold_1G00037660 Rroxscaffold_6G00423820
rosa_rugosa	Rorug02G0211600 Rorug03G0217800 Rorug03G0226500 Rorug03G0226500
rosa_samantha	Rh1CG074800 Rh7CG425200
rosa_wichuraiana	Rw6G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	65, 229
AgsI	TTSAA	2 cut(s)	64, 335
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	65, 229
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	151, 211
Bse3DI	GCAATG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	14, 367
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	257
BssMI	GATC	2 cut(s)	14, 367
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	270, 363
BstDEI	CTNAG	2 cut(s)	264, 372
BstKTI	GATC	2 cut(s)	17, 370
BstMBI	GATC	2 cut(s)	14, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	270, 363
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	4 cut(s)	5, 158, 241, 365
CviKI_1	RGCY	4 cut(s)	5, 158, 241, 365
DdeI	CTNAG	2 cut(s)	264, 372
DpnI	GATC	2 cut(s)	16, 369
DpnII	GATC	2 cut(s)	14, 367
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	75, 191, 219, 342, 356
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	14, 265
Hpy188III	TCNNGA	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	87, 121, 309
HpyCH4V	TGCA	3 cut(s)	161, 224, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	264, 372
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	14, 367
LpnPI	CCDG	4 cut(s)	28, 94, 207, 216
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	2 cut(s)	151, 211
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	16, 369
MboI	GATC	2 cut(s)	14, 367
MboII	GAAGA	3 cut(s)	29, 109, 143
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	31, 65, 229
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	96, 130, 231
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	2 cut(s)	14, 367
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	14, 367
SetI	ASST	3 cut(s)	190, 347, 367
SfaNI	GCATC	2 cut(s)	151, 211
SfcI	CTRYAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	31, 65, 229
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	290
TasI	AATT	3 cut(s)	31, 65, 229
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	16, 371
XapI	RAATTY	2 cut(s)	65, 229
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.