RLG00000013872

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019758
Physical Location & Seq
Forward (+)
43359748 .. 43361056
1309 bp
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UTR
Exon/CDS
Intron
RLM00000013872

Sequence Viewer

Length: 582 bp
ATGGAGGACCTCAAAGCTCTGGAGTCACTGGAGATTAGTAACTGTAATAATATAATCTCCATGCCGGATGGTGGAATTGCAGGTCTGAGTTCCCTTCAAACTCTGTCCATTGAAAACTGCAATAGTCTGATTTCTTTGTCATCGAGTTTGGAGAATCTCATATTCCTTGAGCACTTGGTCATTATGTATTGTCCAAATCTTACTTCTTTCCCAGAGGCCGCGCAATCTCTCTCTGCCTTACGAAGTTTGACTATCTTGAGTTGTCCTTGGTTTGATTCTCTACCAAATGAATTGCAAAATCTCAGGACGCTAGAGTGCCTGCAAATTGGTGGCTGCCTCAATCTAACTGCTTTGCCAGACTGGTTTGAGAAACTGGAGTCTCTCCGATCCTTGACCATTAGCCATTGTCCCAATTTAAGAGCACTGCCACCCTGTCTAACGCTTCTCACTAAACTCCAGCATCTCTCCATTCAAGATTGTCCTAAGCTCGAAGAAAGATGTAGATGGGGAATTGGTGAGGATTGGATCAAAATAGCCCATGTCCCCCATCGATACATTGGTTCAAGACTTCAAGTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

5.33

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 76 - 159 6.9e-07 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 117 - 160 7.8e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019758)

Species Orthologous Gene IDs
malus_domestica MD15G1090400.v1.1
rosa_laevigata RLG00000013872
rosa_multiflora Rmu_co7995590.1_g000001 Rmu_sc0039888.1_g000001 Rmu_ssc0000119.1_g000021
rosa_rugosa Rorug02G0470500
rosa_samantha Rh1DG209000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccII CGCG 1 cut(s) 221
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 381, 533
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 5 cut(s) 98, 113, 473, 564, 572
AhdI GACNNNNNGTC 1 cut(s) 572
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 2 cut(s) 17, 487
AluI AGCT 2 cut(s) 17, 487
Alw21I GWGCWC 2 cut(s) 174, 424
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 2 cut(s) 381, 533
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 527
AvaII GGWCC 1 cut(s) 7
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
Bbv12I GWGCWC 2 cut(s) 174, 424
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 62, 498, 555
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 2 cut(s) 219, 334
BlsI GCNGC 2 cut(s) 220, 335
Bme18I GGWCC 1 cut(s) 7
BmeRI GACNNNNNGTC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 4 cut(s) 41, 50, 395, 440
Bpu10I CCTNAGC 1 cut(s) 483
BpuEI CTTGAG 2 cut(s) 188, 277
Bsa29I ATCGAT 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 33, 365, 378
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 77, 316
BseNI ACTGG 3 cut(s) 33, 365, 378
BseXI GCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 550
BsiHKAI GWGCWC 2 cut(s) 174, 424
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 2 cut(s) 393, 527
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 393, 527
BsnI GGCC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 174, 424
Bsp143I GATC 2 cut(s) 386, 525
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 78, 315
BspDI ATCGAT 1 cut(s) 550
BspFNI CGCG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 2 cut(s) 381, 533
BsrI ACTGG 3 cut(s) 33, 365, 378
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 2 cut(s) 386, 525
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 86, 302, 483
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 389, 528
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 2 cut(s) 386, 525
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 550
BsuRI GGCC 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 550
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 26, 422
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 550
CseI GACGC 1 cut(s) 316
CviAII CATG 2 cut(s) 61, 539
CviJI RGCY 6 cut(s) 17, 218, 333, 402, 487, 536
CviKI_1 RGCY 6 cut(s) 17, 218, 333, 402, 487, 536
DdeI CTNAG 3 cut(s) 86, 302, 483
DpnI GATC 2 cut(s) 388, 527
DpnII GATC 2 cut(s) 386, 525
DriI GACNNNNNGTC 1 cut(s) 572
Eam1105I GACNNNNNGTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 64, 542
FaiI YATR 5 cut(s) 53, 62, 161, 185, 540
FaqI GGGAC 2 cut(s) 393, 527
FatI CATG 2 cut(s) 60, 538
Fnu4HI GCNGC 2 cut(s) 219, 334
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 219, 334
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 219, 334
GsuI CTGGAG 4 cut(s) 41, 50, 395, 440
HaeIII GGCC 1 cut(s) 218
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 223
Hin1II CATG 2 cut(s) 64, 542
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 4 cut(s) 23, 154, 275, 377
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 527
Hpy188I TCNGA 3 cut(s) 87, 129, 386
Hpy188III TCNNGA 5 cut(s) 20, 256, 304, 473, 564
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 80, 120, 295, 322
HpyF3I CTNAG 3 cut(s) 86, 302, 483
Hsp92II CATG 2 cut(s) 64, 542
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 2 cut(s) 386, 525
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 469
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 24, 38
MalI GATC 2 cut(s) 388, 527
MboI GATC 2 cut(s) 386, 525
MboII GAAGA 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 174, 424
MluCI AATT 5 cut(s) 75, 290, 324, 412, 510
MlyI GAGTC 2 cut(s) 32, 386
MnlI CCTC 4 cut(s) 20, 208, 347, 511
MseI TTAA 1 cut(s) 416
MspI CCGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 221
NdeII GATC 2 cut(s) 386, 525
NlaIII CATG 2 cut(s) 64, 542
NmuCI GTSAC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 154, 275
PkrI GCNGC 2 cut(s) 220, 335
PleI GAGTC 2 cut(s) 31, 385
PpsI GAGTC 2 cut(s) 31, 385
PpuMI RGGWCCY 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 7
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 2 cut(s) 219, 334
Sau3AI GATC 2 cut(s) 386, 525
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 32, 386
SduI GDGCHC 2 cut(s) 174, 424
SetI ASST 5 cut(s) 12, 19, 85, 489, 581
SfaNI GCATC 1 cut(s) 469
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 167, 256
SmoI CTYRAG 2 cut(s) 167, 256
Sse9I AATT 5 cut(s) 75, 290, 324, 412, 510
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 143, 489, 550
TasI AATT 5 cut(s) 75, 290, 324, 412, 510
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 154, 275
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 33, 429
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 2 cut(s) 33, 429
VpaK11BI GGWCC 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.