Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039888.1

Orthogroup ID

OG0019758

Physical Location & Seq

Genomic Coordinates Reverse (-)

345 .. 632

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

cagagcatcgggatcggagagtgtgataatctcacggcacttccagagtggttacaaaatctcaccttgctggagcaactgaagattgtgtactgccccaaattgtctgctttgccgcaagggatgcatcgcctcactgcgctgagaggattgctgattagcaggtgtcctgaattgagtaaaagatgtaaaagggaaacaggagaggattggtccaagatcaaacatgtctcaaagattgtactcgaggactctgaggatgaagatgccgatgatatcaatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

95

Amino Acids

10.75

Weight (kDa)

4.98

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019758)

Species	Orthologous Gene IDs
malus_domestica	MD15G1090400.v1.1
rosa_laevigata	RLG00000013872
rosa_multiflora	Rmu_co7995590.1_g000001 Rmu_sc0039888.1_g000001 Rmu_ssc0000119.1_g000021
rosa_rugosa	Rorug02G0470500
rosa_samantha	Rh1DG209000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	92, 243
AflIII	ACRYGT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	213
BmsI	GCATC	4 cut(s)	15, 114, 136, 256
BpmI	CTGGAG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	129, 265
BseMII	CTCAG	2 cut(s)	134, 246
BsiHKCI	CYCGRG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	12, 219
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	135, 247
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	20
BssMI	GATC	2 cut(s)	12, 219
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	143, 255
BstF5I	GGATG	2 cut(s)	129, 265
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	15, 222
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	12, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	129, 265
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	91, 242
CviAII	CATG	1 cut(s)	227
CviQI	GTAC	2 cut(s)	91, 242
DdeI	CTNAG	2 cut(s)	143, 255
DpnI	GATC	2 cut(s)	14, 221
DpnII	GATC	2 cut(s)	12, 219
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	129
FaeI	CATG	1 cut(s)	230
FaiI	YATR	1 cut(s)	228
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	136, 272
Fsp4HI	GCNGC	1 cut(s)	116
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	251
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	17, 256
Hpy188III	TCNNGA	3 cut(s)	10, 44, 170
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	143, 255
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	12, 219
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	56, 57, 148, 183, 186
LweI	GCATC	4 cut(s)	15, 114, 136, 256
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	2 cut(s)	14, 221
MboI	GATC	2 cut(s)	12, 219
MboII	GAAGA	2 cut(s)	94, 275
MluCI	AATT	2 cut(s)	101, 173
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	140, 143, 199, 241, 250
Mph1103I	ATGCAT	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	2 cut(s)	12, 219
NlaIII	CATG	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	153
PciI	ACATGT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	245
RsaI	GTAC	2 cut(s)	92, 243
RsaNI	GTAC	2 cut(s)	91, 242
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	12, 219
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	245
SetI	ASST	2 cut(s)	68, 167
SfaNI	GCATC	4 cut(s)	15, 114, 136, 256
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	101, 173
SsiI	CCGC	1 cut(s)	116
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	101, 173
TatI	WGTACW	2 cut(s)	90, 241
TauI	GCSGC	1 cut(s)	118
TscAI	CASTG	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	213
XceI	RCATGY	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.