Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0019758

Physical Location & Seq

Genomic Coordinates Forward (+)

73045 .. 73377

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000119.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgacaatcatagagtgggataatctcgcggcacttccagagtggttacaaaatctcaccttgctggagcaactggcgattgggaaatgccccaaattgtctgctttgccgcaagggatgcattgcctcactgccttgagagaattggccattcgcgggtgtcctgaattgagcaaaagatgcaaaagggaaacaggagaggattggtccaagatcaaacatgtccaaaagattgaacttgacgactctgaggatgaagctgctgatgatatcgatggtaagtttcatcaatgtcagaactatataaatgaatcgttgtggaatcgaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

4.99

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019758)

Species	Orthologous Gene IDs
malus_domestica	MD15G1090400.v1.1
rosa_laevigata	RLG00000013872
rosa_multiflora	Rmu_co7995590.1_g000001 Rmu_sc0039888.1_g000001 Rmu_ssc0000119.1_g000021
rosa_rugosa	Rorug02G0470500
rosa_samantha	Rh1DG209000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 156
AciI	CCGC	3 cut(s)	29, 110, 156
AcoI	YGGCCR	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	30, 110, 261
BlsI	GCNGC	3 cut(s)	31, 111, 262
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	108, 170
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	273
BseGI	GGATG	2 cut(s)	123, 259
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	2 cut(s)	29, 156
BshFI	GGCC	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	3 cut(s)	29, 110, 156
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	2 cut(s)	29, 156
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	213
BstAPI	GCANNNNNTGC	2 cut(s)	118, 180
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	123, 259
BstFNI	CGCG	2 cut(s)	29, 156
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 180
BstNSI	RCATGY	1 cut(s)	224
BstUI	CGCG	2 cut(s)	29, 156
BstV1I	GCAGC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	149
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	123, 259
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	273
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	2 cut(s)	149, 260
CviKI_1	RGCY	2 cut(s)	149, 260
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	1 cut(s)	224
FaiI	YATR	4 cut(s)	11, 222, 303, 305
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	30, 110, 261
FokI	GGATG	2 cut(s)	130, 266
Fsp4HI	GCNGC	3 cut(s)	30, 110, 261
GluI	GCNGC	3 cut(s)	30, 110, 261
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	3 cut(s)	245, 311, 322
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	250, 297
Hpy188III	TCNNGA	2 cut(s)	38, 164
HpyCH4V	TGCA	2 cut(s)	121, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 180
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	50, 51, 59, 177, 180
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	108, 170
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	3 cut(s)	95, 143, 167
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	137, 193, 244
Mox20I	TGGCCA	1 cut(s)	149
Mph1103I	ATGCAT	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	149
MvnI	CGCG	2 cut(s)	29, 156
MwoI	GCNNNNNNNGC	2 cut(s)	118, 180
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	311, 322
PkrI	GCNGC	3 cut(s)	31, 111, 262
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PscI	ACATGT	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	207
SatI	GCNGC	3 cut(s)	30, 110, 261
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	239
SetI	ASST	2 cut(s)	62, 262
SfaNI	GCATC	2 cut(s)	108, 170
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	95, 143, 167
SsiI	CCGC	3 cut(s)	29, 110, 156
TaqI	TCGA	2 cut(s)	273, 325
TasI	AATT	3 cut(s)	95, 143, 167
TauI	GCSGC	2 cut(s)	32, 112
TfiI	GAWTC	2 cut(s)	311, 322
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	270, 275, 324
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.