RLG00000014020

MatE

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
45834627 .. 45839943
5317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014020

Sequence Viewer

Length: 1653 bp
ATGAATCTGAAAACCATGGCGCTCCATTCCCACACTAGTCACCTCCAAACCCATAAGCGCTTATCTCACCCTTCAATCTTGTACAACCCATTTCACACCTCTCACCGCAGCTCTGTTCGTTATGCCGTTAAGCTGCGAAGTTTTGGTGCTTTGGTGGCGAAAAGCGAGCGTGGCAATGGACGGCTGATAACGGCGTGCATTGCTGGCAGTAATGTTGGTTCATTTGAAGAGGAAGAAGAGGGAGAGGAGCAAGTGGTGGTGGAGGTTGCGGGTTCGAAGAAGGAGGAGTTGGTGGAGCAAAGCCTGTGGAAGCAGGTGAAAGACATTGTCATGTTTTCAGGTCCGGCCACCGGGTTGTGGATTTGTGGGCCGTTGATGAGTCTCATCTCCACCGCTGTTATTGGCCAGGCAAGCTCTACTGAGCTTGCTGCTTTGGGTCCTGGAACTGTCTTCTGTGATAACATGAATCTTTTGTTCATGTTCCTTTCGATTGCGACTTCTAATATGGTTGCCACTGCACTTGCCAAAAGGGATAAAAAGGAACTGCAGCATCAGATATCTATATTGCTCTTCGTTGGATTGACTTGTGGAGTTCTGATGCTCTTGTTTACACAATTCCTTGGTTCATGGGCGCTAACAGCTTTTGCTGGGCCCAAGAATGTGCACATTATACCTGCAGCAAGCAAATATGTTCAGATTCGGGGGTTAGCGTGGCCTGCGATTCTTTTTGGATTGGTTGCTCAAAGCGCAAGTCTTGGCATGAAAGATTCATTGGGACCTTTAAAAGCTCTGGTGGTTGCCAGTGTTGTGAATGGCCTTGGTCATGTAGTCCTATGCAACTTGTTACACTATGGTATTACTGGTGCAGCATGGGCAACAATGGCATCGCAGATTGTTGCTGCTTGTATGATGATTGAAGCTCTGAACAAGAAAGGATTTAGTGCATTTTCCATCACTGTTCCATCGCCTCGTGAATGTCTGCTAATATTTGGGATTGCAGGTCCAGTGTTTGTAACAATGTTCTCAAAGGTGGCCTTCTACTCACTGATGACATACTTTGCTACTGCTATGGGTACAAATATAGTTGCTGCTCATCAGGTCATGATCCAAATGTATGGGATGTGCGTTGTATGGGGTGAGCCTCTTTCTCAAACTGCACAATCGTTTATGCCCGAGTTATTATACGGAGTTAACCGAAGTTTGGAGAAGGCCCGAATGCTGCTAAAGTCACTCGTAATTATTGGAGCTATTCTTGGATTAGCAATAGGGGTTATTGGGATGTCTGTTCCTTGGTTGTTCCCCAATATCTTTACATTTGACCTGAAAGTCATACAAGAGATGCACAAAGTATTGTTTCTGTTCTTCCTGTCGTTATCTATTACGCCCTGTACTCACAGCCTTGAGGGCACATTGCTGGCTGGACGTGATCTTACCTTCATCAGCTTGTCAATGAGTAGTTGTTTTTCCTTGGGTGCTCTTCTACTGTTGCTTGTGAACAGCAGAGGATTTGGTTTGCCAGGCTGCTGGTTTGCGCTTGTTGGCTTTCAATGGGCTCGATTTTTCCTTGCTCTCCGACGGCTTCTTTCTCCCAATGGCATGCTTCATTCAGAAGATCTGGGCTCGTATAAAGTGGAGAAGTTGAAAGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

59.66

Weight (kDa)

9.1

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 122 - 271 3.2e-15 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016752)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
AasI GACNNNNNNGTC 1 cut(s) 1325
Acc36I ACCTGC 3 cut(s) 304, 682, 989
AciI CCGC 3 cut(s) 106, 269, 393
AclWI GGATC 1 cut(s) 1099
AcoI YGGCCR 2 cut(s) 345, 403
AfaI GTAC 3 cut(s) 83, 1075, 1390
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 350, 357, 1201
AgsI TTSAA 5 cut(s) 75, 227, 917, 1547, 1642
AhlI ACTAGT 1 cut(s) 35
AjiI CACGTC 1 cut(s) 1424
AjnI CCWGG 3 cut(s) 405, 439, 1516
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 755, 787
Alw21I GWGCWC 2 cut(s) 666, 1477
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 662
AlwI GGATC 1 cut(s) 1099
Ama87I CYCGRG 1 cut(s) 1172
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 8 cut(s) 345, 368, 403, 650, 713, 814, 1032, 1209
ApaI GGGCCC 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 662
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AspLEI GCGC 5 cut(s) 22, 60, 634, 749, 1534
AspS9I GGNCC 8 cut(s) 341, 368, 437, 650, 651, 776, 1001, 1210
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 5 cut(s) 32, 59, 95, 328, 1148
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 4 cut(s) 341, 437, 776, 1001
BaeGI GKGCMC 3 cut(s) 654, 666, 1409
BalI TGGCCA 1 cut(s) 405
BanII GRGCYC 3 cut(s) 654, 1555, 1622
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 666, 1477
BccI CCATC 2 cut(s) 959, 970
BceAI ACGGC 5 cut(s) 110, 197, 207, 355, 1592
BciT130I CCWGG 3 cut(s) 407, 441, 1518
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 386
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 545, 675
BfoI RGCGCY 3 cut(s) 23, 61, 635
BfuAI ACCTGC 3 cut(s) 304, 682, 989
BglI GCCNNNNNGGC 1 cut(s) 1404
BglII AGATCT 1 cut(s) 1612
Bme1390I CCNGG 4 cut(s) 352, 407, 441, 1518
Bme18I GGWCC 4 cut(s) 341, 437, 776, 1001
BmeT110I CYCGRG 1 cut(s) 1172
BmgBI CACGTC 1 cut(s) 1424
BmgT120I GGNCC 8 cut(s) 341, 368, 437, 650, 651, 776, 1001, 1210
BmiI GGNNCC 3 cut(s) 438, 652, 777
BmrFI CCNGG 4 cut(s) 352, 407, 441, 1518
BmsI GCATC 4 cut(s) 559, 588, 893, 1329
BpiI GAAGAC 1 cut(s) 442
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 1421
BpuMI CCSGG 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 15, 619, 817, 1289, 1467
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 357, 1201
Bse1I ACTGG 3 cut(s) 801, 865, 1004
Bse3DI GCAATG 3 cut(s) 181, 198, 1409
BseBI CCWGG 3 cut(s) 407, 441, 1518
BseDI CCNNGG 5 cut(s) 15, 619, 817, 1289, 1467
BseGI GGATG 2 cut(s) 1125, 1284
BseLI CCNNNNNNNGG 3 cut(s) 350, 357, 1201
BseMI GCAATG 3 cut(s) 181, 198, 1409
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 801, 865, 1004
BseRI GAGGAG 2 cut(s) 260, 299
BseSI GKGCMC 3 cut(s) 654, 666, 1409
BseYI CCCAGC 1 cut(s) 647
BsgI GTGCAG 3 cut(s) 501, 885, 1140
BshFI GGCC 8 cut(s) 347, 370, 405, 652, 715, 816, 1034, 1211
BsiHKAI GWGCWC 2 cut(s) 666, 1477
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 2 cut(s) 344, 351
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 3 cut(s) 350, 357, 1201
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 789
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 8 cut(s) 347, 370, 405, 652, 715, 816, 1034, 1211
BsoBI CYCGRG 1 cut(s) 1172
Bsp119I TTCGAA 1 cut(s) 275
Bsp120I GGGCCC 1 cut(s) 650
Bsp1286I GDGCHC 6 cut(s) 654, 666, 1409, 1477, 1555, 1622
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 1104, 1426, 1612
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 106, 269, 393
BspANI GGCC 8 cut(s) 347, 370, 405, 652, 715, 816, 1034, 1211
BspCNI CTCAG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 3 cut(s) 438, 652, 777
BspMAI CTGCAG 2 cut(s) 549, 679
BspMI ACCTGC 3 cut(s) 304, 682, 989
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 2 cut(s) 575, 1482
BspT104I TTCGAA 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 181, 198, 1409
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 3 cut(s) 801, 865, 1004
BssECI CCNNGG 5 cut(s) 15, 619, 817, 1289, 1467
BssMI GATC 3 cut(s) 1104, 1426, 1612
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 5 cut(s) 15, 619, 817, 1289, 1467
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 3 cut(s) 407, 441, 1518
Bst4CI ACNGT 3 cut(s) 448, 958, 1485
Bst6I CTCTTC 4 cut(s) 222, 231, 575, 1482
BstAUI TGTACA 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 9 cut(s) 167, 196, 205, 412, 426, 682, 717, 1416, 1598
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 1125, 1284
BstH2I RGCGCY 3 cut(s) 23, 61, 635
BstHHI GCGC 5 cut(s) 22, 60, 634, 749, 1534
BstKTI GATC 3 cut(s) 1107, 1429, 1615
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 3 cut(s) 1104, 1426, 1612
BstNI CCWGG 3 cut(s) 407, 441, 1518
BstNSI RCATGY 1 cut(s) 1600
BstSCI CCNGG 4 cut(s) 350, 405, 439, 1516
BstSFI CTRYAG 2 cut(s) 545, 675
BstSLI GKGCMC 3 cut(s) 654, 666, 1409
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 1612
BstXI CCANNNNNNTGG 2 cut(s) 1115, 1524
BstYI RGATCY 1 cut(s) 1612
BsuRI GGCC 8 cut(s) 347, 370, 405, 652, 715, 816, 1034, 1211
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 2 cut(s) 870, 948
BtrI CACGTC 1 cut(s) 1424
BtsCI GGATG 2 cut(s) 1125, 1284
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 5 cut(s) 513, 808, 954, 1011, 1043
BveI ACCTGC 3 cut(s) 304, 682, 989
Cac8I GCNNGC 9 cut(s) 167, 196, 205, 412, 426, 682, 717, 1416, 1598
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 5 cut(s) 22, 60, 634, 749, 1534
Cfr13I GGNCC 8 cut(s) 341, 368, 437, 650, 651, 776, 1001, 1210
Csp6I GTAC 3 cut(s) 82, 1074, 1389
CspCI CAANNNNNGTGG 4 cut(s) 287, 322, 502, 537
CviQI GTAC 3 cut(s) 82, 1074, 1389
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 1106, 1428, 1614
DpnII GATC 3 cut(s) 1104, 1426, 1612
DraI TTTAAA 1 cut(s) 783
DrdI GACNNNNNNGTC 1 cut(s) 1325
DseDI GACNNNNNNGTC 1 cut(s) 1325
EaeI YGGCCR 2 cut(s) 345, 403
Eam1104I CTCTTC 4 cut(s) 222, 231, 575, 1482
EarI CTCTTC 4 cut(s) 222, 231, 575, 1482
Eco130I CCWWGG 5 cut(s) 15, 619, 817, 1289, 1467
Eco24I GRGCYC 3 cut(s) 654, 1555, 1622
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 4 cut(s) 341, 437, 776, 1001
Eco47III AGCGCT 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 1172
EcoO109I RGGNCCY 2 cut(s) 437, 776
EcoRII CCWGG 3 cut(s) 405, 439, 1516
EcoRV GATATC 1 cut(s) 558
EcoT14I CCWWGG 5 cut(s) 15, 619, 817, 1289, 1467
EcoT38I GRGCYC 3 cut(s) 654, 1555, 1622
ErhI CCWWGG 5 cut(s) 15, 619, 817, 1289, 1467
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 1 cut(s) 789
FauI CCCGC 1 cut(s) 262
FokI GGATG 2 cut(s) 1132, 1291
FriOI GRGCYC 3 cut(s) 654, 1555, 1622
FspBI CTAG 1 cut(s) 36
GlaI GCGC 5 cut(s) 21, 59, 633, 748, 1533
GsaI CCCAGC 1 cut(s) 651
HaeII RGCGCY 3 cut(s) 23, 61, 635
HaeIII GGCC 8 cut(s) 347, 370, 405, 652, 715, 816, 1034, 1211
HapII CCGG 2 cut(s) 344, 351
HhaI GCGC 5 cut(s) 22, 60, 634, 749, 1534
Hin6I GCGC 5 cut(s) 20, 58, 632, 747, 1532
HinP1I GCGC 5 cut(s) 20, 58, 632, 747, 1532
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HinfI GANTC 6 cut(s) 4, 379, 466, 697, 721, 767
HpaI GTTAAC 1 cut(s) 1192
HpaII CCGG 2 cut(s) 344, 351
HphI GGTGA 5 cut(s) 32, 59, 95, 328, 1148
Hpy166II GTNNAC 4 cut(s) 609, 664, 1192, 1495
Hpy188I TCNGA 7 cut(s) 9, 555, 597, 696, 924, 1574, 1609
Hpy188III TCNNGA 2 cut(s) 971, 1102
Hpy8I GTNNAC 4 cut(s) 609, 664, 1192, 1495
Hpy99I CGWCG 1 cut(s) 1578
HpyAV CCTTC 5 cut(s) 81, 274, 1045, 1201, 1444
HpyCH4III ACNGT 3 cut(s) 448, 958, 1485
HpyCH4IV ACGT 1 cut(s) 1423
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 1423
HspAI GCGC 5 cut(s) 20, 58, 632, 747, 1532
KspAI GTTAAC 1 cut(s) 1192
Kzo9I GATC 3 cut(s) 1104, 1426, 1612
LguI GCTCTTC 2 cut(s) 575, 1482
LmnI GCTCC 4 cut(s) 27, 247, 295, 1244
LweI GCATC 4 cut(s) 559, 588, 893, 1329
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 1423
MaeIII GTNAC 4 cut(s) 38, 843, 1012, 1227
MalI GATC 3 cut(s) 1106, 1428, 1614
MboI GATC 3 cut(s) 1104, 1426, 1612
MboII GAAGA 9 cut(s) 239, 245, 248, 289, 442, 562, 1354, 1469, 1622
MflI RGATCY 1 cut(s) 1612
MhlI GDGCHC 6 cut(s) 654, 666, 1409, 1477, 1555, 1622
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 2 cut(s) 614, 1236
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 2 cut(s) 556, 1597
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MseI TTAA 4 cut(s) 129, 782, 1191, 1651
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 344, 351
MspR9I CCNGG 4 cut(s) 352, 407, 441, 1518
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 3 cut(s) 407, 441, 1518
NciI CCSGG 1 cut(s) 352
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 1104, 1426, 1612
NlaIV GGNNCC 3 cut(s) 438, 652, 777
NmuCI GTSAC 2 cut(s) 38, 1227
NspI RCATGY 1 cut(s) 1600
NspV TTCGAA 1 cut(s) 275
PaeI GCATGC 1 cut(s) 1600
PagI TCATGA 1 cut(s) 1101
PaqCI CACCTGC 1 cut(s) 304
PciSI GCTCTTC 2 cut(s) 575, 1482
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 5 cut(s) 4, 466, 697, 721, 767
PflFI GACNNNGTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 439
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PpuMI RGGWCCY 2 cut(s) 437, 776
Psp5II RGGWCCY 2 cut(s) 437, 776
Psp6I CCWGG 3 cut(s) 405, 439, 1516
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 3 cut(s) 405, 439, 1516
PspN4I GGNNCC 3 cut(s) 438, 652, 777
PspOMI GGGCCC 1 cut(s) 650
PspPI GGNCC 8 cut(s) 341, 368, 437, 650, 651, 776, 1001, 1210
PspPPI RGGWCCY 2 cut(s) 437, 776
PsrI GAACNNNNNNTAC 2 cut(s) 202, 234
PstI CTGCAG 2 cut(s) 549, 679
PsuI RGATCY 1 cut(s) 1612
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 3 cut(s) 83, 1075, 1390
RsaNI GTAC 3 cut(s) 82, 1074, 1389
RseI CAYNNNNRTG 1 cut(s) 329
SapI GCTCTTC 2 cut(s) 575, 1482
SaqAI TTAA 4 cut(s) 129, 782, 1191, 1651
Sau3AI GATC 3 cut(s) 1104, 1426, 1612
Sau96I GGNCC 8 cut(s) 341, 368, 437, 650, 651, 776, 1001, 1210
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 4 cut(s) 352, 407, 441, 1518
SduI GDGCHC 6 cut(s) 654, 666, 1409, 1477, 1555, 1622
SfaNI GCATC 4 cut(s) 559, 588, 893, 1329
SfcI CTRYAG 2 cut(s) 545, 675
SfuI TTCGAA 1 cut(s) 275
SinI GGWCC 4 cut(s) 341, 437, 776, 1001
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 1400
SmoI CTYRAG 1 cut(s) 1400
SpeI ACTAGT 1 cut(s) 35
SphI GCATGC 1 cut(s) 1600
Sse9I AATT 2 cut(s) 614, 1236
SsiI CCGC 3 cut(s) 106, 269, 393
SspI AATATT 1 cut(s) 987
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 350, 405, 439, 1516
StyI CCWWGG 5 cut(s) 15, 619, 817, 1289, 1467
TaaI ACNGT 3 cut(s) 448, 958, 1485
TaiI ACGT 1 cut(s) 1426
TaqI TCGA 3 cut(s) 275, 488, 1555
TasI AATT 2 cut(s) 614, 1236
TatI WGTACW 2 cut(s) 81, 1388
TfiI GAWTC 5 cut(s) 4, 466, 697, 721, 767
Tru1I TTAA 4 cut(s) 129, 782, 1191, 1651
Tru9I TTAA 4 cut(s) 129, 782, 1191, 1651
TscAI CASTG 5 cut(s) 520, 808, 961, 1011, 1050
TseFI GTSAC 2 cut(s) 38, 1227
Tsp45I GTSAC 2 cut(s) 38, 1227
TspDTI ATGAA 9 cut(s) 17, 210, 466, 479, 615, 759, 776, 1426, 1592
TspGWI ACGGA 1 cut(s) 1200
TspRI CASTG 5 cut(s) 520, 808, 961, 1011, 1050
Tth111I GACNNNGTC 1 cut(s) 326
VneI GTGCAC 1 cut(s) 662
VpaK11BI GGWCC 4 cut(s) 341, 437, 776, 1001
XceI RCATGY 1 cut(s) 1600
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.