Rorug06G0030400

MatE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016752
Physical Location & Seq
Reverse (-)
3580866 .. 3583191
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0030400.1

Sequence Viewer

Length: 1398 bp
ATGGTGAGCCACAGAGGAGGTGGTGGTGGTGGTGGTGCGACTACTACCTCCAAAGCCCACCGCCTGGTGTTCATTCTCCCAATCATTATCATCTTTGGATTGCTTTCATGGGTTTTCACTTCTCACGTGGTCTCTGCTCCAAAGTCTTCAACAAAGATTGGATCCAGTTTTGTTGTTGGTGTTGAAGTGTACGGTACTCCAGTGGAAAAAAATCACTCTCAGATCATTAATGGGACAAGACATTATACTAATCTAGAGAGGCTGGAGGGGCGTCTACGACGAGCTCGTGTCGCGATTAAGTTGGGAAACCGATCACAAGATTCCGACTACATCCCTCATGGACCAATGTATTGGAATGCTAATGCATTTCACAGGAGCTATATTGAAATGGAGAAACAGTTCAAAGTGTTTGTGTATGGAGAAGGGGAACTTCCATTGTTTCATAATGGTCCTTGCAAAAGCATATATTCCATGGAGGGGAACTTTATACATGAACTGGAGGTGAATAAGCAATTTCGGACGCTAGATCCTGATAAGGCATATGTTTATTTTCTTCCCTTCAGTGTGACAATGTTGGTTAAGTATGTTTATGTGCCCAACTCACATGATTTCGGTCCAATCAAGCAAACAGTGAGAGACTATGCGAGTCTTATCTCCACCAAGTATCCGTTCTGGAATAGAAGCCTAGCAGCAGATCACTTTATGGTTGCTTGCCATGATTGGGGGCCAGAAGTTTCAAAATCTAATGATTATCTTGGTAGAAACTCGATTAGGGTGCTATGCAATGCGAATACATCTGAAGGCTTCAACCCTTCTAAAGATGTGTCTTTTCCGGAGATCAACCTTCCAAATGGAAACACACATGGTTTAATTGGTGGACCTTCTCCAAGGGTACGAACTGTGCTAGCTTTTTTTGCAGGAGGACTTCATGGCCCTATTAGGCCTCTATTGTTGGAGTTGTGGGAGAACAAAGATCAGGACATGATGGTGCACCAGTACCTTCCAAAGGGGGTTGATTATTATAAGATGATGAGAAAGAGCAAGTTCTGTCTTTGTCCAAGTGGGTTTGAAGTTGCTAGTCCAAGGGTGGTTGAGGCGATTTACACTGGCTGTGTTCCGGTGCTCATCTCAGATCATTATGTGGCTCCATTTGGTGATGCTCTGAACTGGAAATCATTCTCTGTTGAAGTTTCAGTTAATGACATTCCAAATTTGAAAAGGATACTCATGAGCATATCTACAAGCCATTATCTAAGAATGCAAAGAAGGTTGATTCAAGTGAGGAAGCATTTTGAGTTCAACTCTCCTCCAAAGCGATTTGATGTCTTCCACATGATTTTACATTCTATATGGCTCAGAAGACTCAACGTCAGAGTTCATGATGGCCTGCCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

465

Amino Acids

52.83

Weight (kDa)

9.44

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 131 - 412 7.2e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10120 FvH4_2g10120 FvH4_2g10120 FvH4_2g10120
rosa_chinensis RchiOBHm_Chr6g0267191
rosa_laevigata RLG00000014020
rosa_multiflora Rmu_sc0000908.1_g000024 Rmu_ssc0000388.1_g000047
rosa_roxburghii Rroxscaffold_7G00201000
rosa_rugosa Rorug06G0030400
rosa_samantha Rh6BG152600 Rh6CG148500 Rh6DG136800
rosa_wichuraiana Rw6G013140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 274
AccII CGCG 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 832
AciI CCGC 1 cut(s) 61
AclWI GGATC 3 cut(s) 156, 169, 521
AcsI RAATTY 1 cut(s) 1210
AcuI CTGAAG 2 cut(s) 544, 819
AcvI CACGTG 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 4 cut(s) 191, 196, 894, 998
AfiI CCNNNNNNNGG 4 cut(s) 64, 477, 721, 1006
AhdI GACNNNNNGTC 1 cut(s) 1367
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
AluBI AGCT 3 cut(s) 284, 378, 908
AluI AGCT 3 cut(s) 284, 378, 908
Alw21I GWGCWC 3 cut(s) 286, 993, 1125
Alw26I GTCTC 2 cut(s) 136, 630
Alw44I GTGCAC 1 cut(s) 989
AlwI GGATC 3 cut(s) 156, 169, 521
Aor13HI TCCGGA 1 cut(s) 832
AoxI GGCC 4 cut(s) 725, 931, 941, 1384
ApaLI GTGCAC 1 cut(s) 989
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 1 cut(s) 1210
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 398, 1175
AspS9I GGNCC 6 cut(s) 341, 449, 614, 725, 878, 932
AsuHPI GGTGA 3 cut(s) 16, 514, 1166
AsuNHI GCTAGC 1 cut(s) 904
AvaII GGWCC 4 cut(s) 341, 449, 614, 878
BaeGI GKGCMC 2 cut(s) 597, 993
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BamHI GGATCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 285
BbrPI CACGTG 1 cut(s) 127
BbsI GAAGAC 3 cut(s) 138, 1318, 1366
Bbv12I GWGCWC 3 cut(s) 286, 993, 1125
BbvI GCAGC 1 cut(s) 701
BccI CCATC 2 cut(s) 979, 1376
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 1 cut(s) 65
BciVI GTATCC 2 cut(s) 675, 1215
BcoDI GTCTC 2 cut(s) 136, 630
BfaI CTAG 5 cut(s) 254, 524, 686, 905, 1077
BfuI GTATCC 2 cut(s) 675, 1215
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 4 cut(s) 341, 449, 614, 878
BmeRI GACNNNNNGTC 1 cut(s) 1367
BmgT120I GGNCC 6 cut(s) 341, 449, 614, 725, 878, 932
BmiI GGNNCC 3 cut(s) 163, 726, 1146
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 1147
BmtI GCTAGC 1 cut(s) 908
BpiI GAAGAC 3 cut(s) 138, 1318, 1366
BplI GAGNNNNNCTC 2 cut(s) 1286, 1318
BpmI CTGGAG 3 cut(s) 183, 284, 518
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 471, 887, 1082
BsaWI WCCGGW 2 cut(s) 832, 1117
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 477, 721, 1006
Bse1I ACTGG 6 cut(s) 165, 200, 501, 994, 1111, 1172
Bse3DI GCAATG 1 cut(s) 790
BseAI TCCGGA 1 cut(s) 832
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 471, 887, 1082
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 64, 477, 721, 1006
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 3 cut(s) 233, 1143, 1369
BseNI ACTGG 6 cut(s) 165, 200, 501, 994, 1111, 1172
BseRI GAGGAG 2 cut(s) 30, 1296
BseSI GKGCMC 2 cut(s) 597, 993
BseXI GCAGC 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 4 cut(s) 727, 933, 943, 1386
BsiHKAI GWGCWC 3 cut(s) 286, 993, 1125
BsiSI CCGG 2 cut(s) 833, 1118
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 4 cut(s) 64, 477, 721, 1006
BsmAI GTCTC 2 cut(s) 136, 630
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 2 cut(s) 361, 1263
BsnI GGCC 4 cut(s) 727, 933, 943, 1386
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 4 cut(s) 286, 597, 993, 1125
Bsp13I TCCGGA 1 cut(s) 832
Bsp143I GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
Bsp19I CCATGG 1 cut(s) 471
Bsp68I TCGCGA 1 cut(s) 293
BspACI CCGC 1 cut(s) 61
BspANI GGCC 4 cut(s) 727, 933, 943, 1386
BspCNI CTCAG 3 cut(s) 232, 1142, 1368
BspEI TCCGGA 1 cut(s) 832
BspFNI CGCG 1 cut(s) 293
BspHI TCATGA 2 cut(s) 1227, 1378
BspLI GGNNCC 3 cut(s) 163, 726, 1146
BspOI GCTAGC 1 cut(s) 908
BspPI GGATC 3 cut(s) 156, 169, 521
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 6 cut(s) 165, 200, 501, 994, 1111, 1172
BssECI CCNNGG 3 cut(s) 471, 887, 1082
BssMI GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
BssNI GRCGYC 1 cut(s) 271
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 3 cut(s) 471, 887, 1082
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 4 cut(s) 194, 399, 631, 901
BstACI GRCGYC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 712, 906, 1388
BstDEI CTNAG 4 cut(s) 219, 1129, 1253, 1355
BstDSI CCRYGG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 1004
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 8 cut(s) 164, 225, 314, 529, 697, 840, 976, 1135
BstMAI GTCTC 2 cut(s) 136, 630
BstMBI GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
BstMWI GCNNNNNNNGC 3 cut(s) 268, 290, 914
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 597, 993
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 701
BstV2I GAAGAC 3 cut(s) 138, 1318, 1366
BstX2I RGATCY 2 cut(s) 161, 526
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 2 cut(s) 161, 526
BsuI GTATCC 2 cut(s) 675, 1215
BsuRI GGCC 4 cut(s) 727, 933, 943, 1386
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 207, 568, 636, 1104
BtuMI TCGCGA 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 712, 906, 1388
CciI TCATGA 2 cut(s) 1227, 1378
Cfr13I GGNCC 6 cut(s) 341, 449, 614, 725, 878, 932
CseI GACGC 2 cut(s) 260, 529
Csp6I GTAC 4 cut(s) 190, 195, 893, 997
CviQI GTAC 4 cut(s) 190, 195, 893, 997
DdeI CTNAG 4 cut(s) 219, 1129, 1253, 1355
DpnI GATC 8 cut(s) 163, 224, 313, 528, 696, 839, 975, 1134
DpnII GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
DriI GACNNNNNGTC 1 cut(s) 1367
Eam1105I GACNNNNNGTC 1 cut(s) 1367
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 3 cut(s) 471, 887, 1082
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 4 cut(s) 341, 449, 614, 878
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 544, 819
Eco72I CACGTG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 1004
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 3 cut(s) 471, 887, 1082
EcoT22I ATGCAT 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 471, 887, 1082
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 247
FauNDI CATATG 1 cut(s) 541
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 5 cut(s) 254, 524, 686, 905, 1077
GluI GCNGC 1 cut(s) 690
GsuI CTGGAG 3 cut(s) 183, 284, 518
HaeIII GGCC 4 cut(s) 727, 933, 943, 1386
HapII CCGG 2 cut(s) 833, 1118
HgaI GACGC 2 cut(s) 260, 529
Hin1I GRCGYC 1 cut(s) 271
HinfI GANTC 4 cut(s) 320, 646, 1273, 1362
HpaII CCGG 2 cut(s) 833, 1118
HphI GGTGA 3 cut(s) 16, 514, 1166
Hpy166II GTNNAC 4 cut(s) 190, 275, 878, 991
Hpy188I TCNGA 8 cut(s) 222, 325, 519, 799, 1132, 1164, 1358, 1373
Hpy188III TCNNGA 8 cut(s) 254, 292, 530, 673, 833, 977, 1228, 1379
Hpy8I GTNNAC 4 cut(s) 190, 275, 878, 991
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 8 cut(s) 416, 568, 794, 822, 854, 891, 1010, 1260
HpyCH4III ACNGT 4 cut(s) 194, 399, 631, 901
HpyCH4IV ACGT 2 cut(s) 126, 1368
HpyCH4V TGCA 6 cut(s) 365, 456, 783, 917, 991, 1261
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 290, 914
HpyF3I CTNAG 4 cut(s) 219, 1129, 1253, 1355
HpySE526I ACGT 2 cut(s) 126, 1368
Hsp92I GRCGYC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 832
Kzo9I GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
LmnI GCTCC 3 cut(s) 142, 375, 1150
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 1 cut(s) 1147
MaeI CTAG 5 cut(s) 254, 524, 686, 905, 1077
MaeII ACGT 2 cut(s) 126, 1368
MaeIII GTNAC 1 cut(s) 565
MalI GATC 8 cut(s) 163, 224, 313, 528, 696, 839, 975, 1134
MboI GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
MboII GAAGA 4 cut(s) 138, 545, 1318, 1371
MflI RGATCY 2 cut(s) 161, 526
MhlI GDGCHC 4 cut(s) 286, 597, 993, 1125
MluCI AATT 3 cut(s) 512, 870, 1210
MlyI GAGTC 2 cut(s) 655, 1356
MmeI TCCRAC 2 cut(s) 348, 933
Mph1103I ATGCAT 1 cut(s) 367
MroI TCCGGA 1 cut(s) 832
MroXI GAANNNNTTC 2 cut(s) 398, 1175
MseI TTAA 6 cut(s) 228, 297, 579, 869, 1197, 1396
MslI CAYNNNNRTG 1 cut(s) 986
MspI CCGG 2 cut(s) 833, 1118
MspR9I CCNGG 1 cut(s) 65
Mva1269I GAATGC 2 cut(s) 361, 1263
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 268, 290, 914
NcoI CCATGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 541
NdeII GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
NheI GCTAGC 1 cut(s) 904
NlaIV GGNNCC 3 cut(s) 163, 726, 1146
NmuCI GTSAC 1 cut(s) 565
NruI TCGCGA 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 367
PagI TCATGA 2 cut(s) 1227, 1378
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PctI GAATGC 2 cut(s) 361, 1263
PdmI GAANNNNTTC 2 cut(s) 398, 1175
PfeI GAWTC 2 cut(s) 320, 1273
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 2 cut(s) 654, 1356
PmaCI CACGTG 1 cut(s) 127
PmlI CACGTG 1 cut(s) 127
PpsI GAGTC 2 cut(s) 654, 1356
Ppu21I YACGTR 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 1023
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 63
PspCI CACGTG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 163, 726, 1146
PspPI GGNCC 6 cut(s) 341, 449, 614, 725, 878, 932
PsuI RGATCY 2 cut(s) 161, 526
RruI TCGCGA 1 cut(s) 293
RsaI GTAC 4 cut(s) 191, 196, 894, 998
RsaNI GTAC 4 cut(s) 190, 195, 893, 997
RseI CAYNNNNRTG 1 cut(s) 986
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 6 cut(s) 228, 297, 579, 869, 1197, 1396
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 8 cut(s) 161, 222, 311, 526, 694, 837, 973, 1132
Sau96I GGNCC 6 cut(s) 341, 449, 614, 725, 878, 932
SchI GAGTC 2 cut(s) 655, 1356
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 4 cut(s) 286, 597, 993, 1125
SfaNI GCATC 1 cut(s) 1147
SinI GGWCC 4 cut(s) 341, 449, 614, 878
SmiMI CAYNNNNRTG 1 cut(s) 986
Sse9I AATT 3 cut(s) 512, 870, 1210
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 1 cut(s) 61
SspMI CTAG 5 cut(s) 254, 524, 686, 905, 1077
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 3 cut(s) 471, 887, 1082
TaaI ACNGT 4 cut(s) 194, 399, 631, 901
TaiI ACGT 2 cut(s) 129, 1371
TaqI TCGA 1 cut(s) 767
TaqII GACCGA 1 cut(s) 602
TasI AATT 3 cut(s) 512, 870, 1210
TfiI GAWTC 2 cut(s) 320, 1273
Tru1I TTAA 6 cut(s) 228, 297, 579, 869, 1197, 1396
Tru9I TTAA 6 cut(s) 228, 297, 579, 869, 1197, 1396
TscAI CASTG 4 cut(s) 207, 568, 636, 1111
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 689
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 6 cut(s) 61, 96, 431, 507, 917, 1367
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 4 cut(s) 207, 568, 636, 1111
Van91I CCANNNNNTGG 1 cut(s) 64
VneI GTGCAC 1 cut(s) 989
VpaK11BI GGWCC 4 cut(s) 341, 449, 614, 878
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 1004
XapI RAATTY 1 cut(s) 1210
XbaI TCTAGA 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 274
XmnI GAANNNNTTC 2 cut(s) 398, 1175
XspI CTAG 5 cut(s) 254, 524, 686, 905, 1077
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.