Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020585

Physical Location & Seq

Genomic Coordinates Forward (+)

61124017 .. 61125197

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAATGGCATAGCACAGAAACTTCCAAGGGACATCAGGGCTACTCGGTCCCTGATGCCATGCTTTGCCTTGCAAAGCAGCACAACATTGCAGCATGGTACTTGGAGCAGATTCTAAGGGAGGTACATTCTCACCCACAAATTCAAGGAATTGTGATTTGGTCTGCATGGCAACCTCAAGGATGTTACAGAATGTGCTTAACCGATAACAACTTCAATAACTTGGCCACTGGTAATGTTGTGGACAAGTTACTACATGAATGGGGTTTGTGGACTTTGGATTCGACTTCTGCCACAACAGACGCTAATGGTTTCTTTGAGGCCTCCCTCTTCCACGGGGATTATGAAGTTAACATTACTCACCCCTCTGTCACAAATTCCTCCTTGGTTCACAGATTCAATGTGTTACCAAAATCTGAGTCCCCGGAACCATTGCAGCTTAAACTCTGTGTGAGAATACTCAGAGGAATGCTAGGCCGCTGGCAACCTTCCCCTCCAACATTTTCCTTGTCACATTTCCTATTCATTGCTTGCTTGGTTATACATTTATCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

6.58

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020585)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252831
rosa_laevigata	RLG00000015062
rosa_rugosa	Rorug05G0538900 Rorug05G0539000
rosa_samantha	Rh6AG055000 Rh6BG049100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	141, 376
AfaI	GTAC	2 cut(s)	101, 126
AgsI	TTSAA	3 cut(s)	146, 217, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
AoxI	GGCC	3 cut(s)	225, 321, 475
ApeKI	GCWGC	3 cut(s)	79, 92, 436
ApoI	RAATTY	2 cut(s)	141, 376
ArsI	GACNNNNNNTTYG	4 cut(s)	265, 297, 404, 436
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	125, 353
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	91, 104, 448
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	1 cut(s)	473
BisI	GCNGC	4 cut(s)	80, 93, 437, 478
BlsI	GCNGC	4 cut(s)	81, 94, 438, 479
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	51, 429
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	27, 334, 384, 423
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	3 cut(s)	87, 431, 525
BseDI	CCNNGG	4 cut(s)	27, 334, 384, 423
BseGI	GGATG	1 cut(s)	188
BseMI	GCAATG	3 cut(s)	87, 431, 525
BseMII	CTCAG	2 cut(s)	408, 475
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	91, 104, 448
BshFI	GGCC	3 cut(s)	227, 323, 477
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	3 cut(s)	35, 45, 406
BsmFI	GGGAC	3 cut(s)	35, 45, 406
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	227, 323, 477
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	3 cut(s)	227, 323, 477
BspCNI	CTCAG	2 cut(s)	409, 474
BspLI	GGNNCC	2 cut(s)	51, 429
BsrDI	GCAATG	3 cut(s)	87, 431, 525
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	27, 334, 384, 423
BssT1I	CCWWGG	2 cut(s)	27, 384
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	482, 532
BstDEI	CTNAG	3 cut(s)	116, 417, 461
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	91, 104, 448
BsuRI	GGCC	3 cut(s)	227, 323, 477
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	482, 532
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	100, 125
CviAII	CATG	4 cut(s)	61, 96, 168, 257
CviJI	RGCY	5 cut(s)	42, 227, 323, 439, 477
CviKI_1	RGCY	5 cut(s)	42, 227, 323, 439, 477
CviQI	GTAC	2 cut(s)	100, 125
DdeI	CTNAG	3 cut(s)	116, 417, 461
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	27, 384
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	27, 384
ErhI	CCWWGG	2 cut(s)	27, 384
FaeI	CATG	4 cut(s)	64, 99, 171, 260
FaiI	YATR	7 cut(s)	12, 62, 97, 169, 258, 345, 542
FaqI	GGGAC	3 cut(s)	35, 45, 406
FatI	CATG	4 cut(s)	60, 95, 167, 256
Fnu4HI	GCNGC	4 cut(s)	80, 93, 437, 478
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	80, 93, 437, 478
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	4 cut(s)	80, 93, 437, 478
HaeIII	GGCC	3 cut(s)	227, 323, 477
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	64, 99, 171, 260
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	4 cut(s)	112, 281, 396, 419
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	125, 353
Hpy166II	GTNNAC	4 cut(s)	244, 273, 352, 391
Hpy188I	TCNGA	2 cut(s)	418, 464
Hpy8I	GTNNAC	4 cut(s)	244, 273, 352, 391
HpyAV	CCTTC	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	74, 92, 167, 436
HpyF3I	CTNAG	3 cut(s)	116, 417, 461
Hsp92II	CATG	4 cut(s)	64, 99, 171, 260
KspAI	GTTAAC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	23, 66, 216, 438, 466
Lsp1109I	GCAGC	3 cut(s)	91, 104, 448
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	5 cut(s)	185, 249, 370, 405, 510
MboII	GAAGA	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	3 cut(s)	141, 150, 376
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	9 cut(s)	115, 186, 313, 334, 338, 376, 391, 458, 504
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	3 cut(s)	200, 351, 441
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	425
NlaIII	CATG	4 cut(s)	64, 99, 171, 260
NlaIV	GGNNCC	2 cut(s)	51, 429
NmuCI	GTSAC	2 cut(s)	370, 510
PceI	AGGCCT	1 cut(s)	323
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	112, 281, 396
PkrI	GCNGC	4 cut(s)	81, 94, 438, 479
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	51, 429
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	2 cut(s)	101, 126
RsaNI	GTAC	2 cut(s)	100, 125
SaqAI	TTAA	3 cut(s)	200, 351, 441
SatI	GCNGC	4 cut(s)	80, 93, 437, 478
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	4 cut(s)	126, 178, 441, 490
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	3 cut(s)	141, 150, 376
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	2 cut(s)	27, 384
TaqI	TCGA	2 cut(s)	284, 551
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	141, 150, 376
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	112, 281, 396
Tru1I	TTAA	3 cut(s)	200, 351, 441
Tru9I	TTAA	3 cut(s)	200, 351, 441
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	370, 510
TseI	GCWGC	3 cut(s)	79, 92, 436
Tsp45I	GTSAC	2 cut(s)	370, 510
TspDTI	ATGAA	4 cut(s)	17, 273, 360, 514
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	141, 376
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.