Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0020585

Physical Location & Seq

Genomic Coordinates Reverse (-)

72744723 .. 72745771

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0538900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGGGTACAAACAACATGTTCAACAAGTCCTCTTGAAAGAATTCGAAGCCAGGATTTTCTTCTAAACAGTGAGTTAGTCTCAAGTAAGAAGGAGCACTACTCTGGTGACAGAAGCAATGATGACCTAGAGTTGCCATTGTTTGATTTCACCTCTATAGCAGCGGCTACGGAGAACTTTTCTGATGAAAATAAATTGGGACAAGGTGGTTTTGGTTGTGTTTACAAGGGGTTTGTCGAAGGTCAAAAGATAGTTGTGAAGAGACTTTCAAAGAACTCTGGACAAGGAACCAAAGAATTCAAAAACGAAGTGAAGTTAATTGCAAAGCTTCAACACAGAAATCTTGTTCGACTGCTTGGTTGCTGTGTTGATGCGGATGAAAAGATGCTGATTTACGAATACATGGAAAATAAAAGCCTCGATTCCTTTTTATTCGATAAAGCAAAAAGGTATTTGCTGGATTGGCAAAAGCGTTTCAACAATATCTGTGGGATTGCTCGAGGGCTTCTTGATCTTCACCAGGATTCGAGATTCAGAATTATCCATAGGGACCTCAAGGCAAGCAACATTCTACTAGATGGAGAATTGGACCCCAAGATATCGGACTTTGGAATGGCAAGACTATTCGGTCAGGATCAGACAGAAGCCAATACAAAAAAAGTAGTGGGAACATATGGATATATGTGTCCTGAATACGCAATGGATGGTCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

238

Amino Acids

27.17

Weight (kDa)

6.45

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3660	PF12398	14 - 50	2.8e-07	Receptor serine/threonine kinase
Pkinase	PF00069	61 - 232	3.9e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 236	1.7e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020585)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252831
rosa_laevigata	RLG00000015062
rosa_rugosa	Rorug05G0538900 Rorug05G0539000
rosa_samantha	Rh6AG055000 Rh6BG049100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	627
AciI	CCGC	2 cut(s)	164, 374
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	42, 296
AfaI	GTAC	1 cut(s)	9
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	24, 38, 270, 301, 332, 478
AjnI	CCWGG	2 cut(s)	51, 519
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	85, 256, 713
AlwI	GGATC	1 cut(s)	642
Ama87I	CYCGRG	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	42, 296
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	550, 589
AsuHPI	GGTGA	3 cut(s)	119, 142, 509
AsuII	TTCGAA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	550, 589
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	572, 698
BciT130I	CCWGG	2 cut(s)	53, 521
BcoDI	GTCTC	3 cut(s)	85, 256, 713
BfaI	CTAG	2 cut(s)	128, 575
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	162, 165
BlsI	GCNGC	2 cut(s)	163, 166
Bme1390I	CCNGG	2 cut(s)	53, 521
Bme18I	GGWCC	2 cut(s)	550, 589
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	550, 589
BmiI	GGNNCC	3 cut(s)	289, 551, 591
BmrFI	CCNGG	2 cut(s)	53, 521
BmsI	GCATC	2 cut(s)	361, 375
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 86, 118
Bpu14I	TTCGAA	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	67, 539
BsaI	GGTCTC	1 cut(s)	713
Bse3DI	GCAATG	2 cut(s)	124, 705
BseBI	CCWGG	2 cut(s)	53, 521
BseGI	GGATG	2 cut(s)	382, 709
BseMI	GCAATG	2 cut(s)	124, 705
BseXI	GCAGC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	498
BslFI	GGGAC	2 cut(s)	213, 563
BsmAI	GTCTC	3 cut(s)	85, 256, 713
BsmFI	GGGAC	2 cut(s)	213, 563
Bso31I	GGTCTC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	511, 634
BspACI	CCGC	2 cut(s)	164, 374
BspLI	GGNNCC	3 cut(s)	289, 551, 591
BspPI	GGATC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	124, 705
BssMI	GATC	2 cut(s)	511, 634
Bst2UI	CCWGG	2 cut(s)	53, 521
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	562
BstF5I	GGATG	2 cut(s)	382, 709
BstKTI	GATC	2 cut(s)	514, 637
BstMAI	GTCTC	3 cut(s)	85, 256, 713
BstMBI	GATC	2 cut(s)	511, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	2 cut(s)	53, 521
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	51, 519
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	382, 709
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	550, 589
Csp6I	GTAC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	2 cut(s)	18, 403
CviJI	RGCY	6 cut(s)	51, 167, 328, 417, 505, 647
CviKI_1	RGCY	6 cut(s)	51, 167, 328, 417, 505, 647
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	2 cut(s)	513, 636
DpnII	GATC	2 cut(s)	511, 634
DrdI	GACNNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	713
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	550, 589
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRI	GAATTC	2 cut(s)	42, 296
EcoRII	CCWGG	2 cut(s)	51, 519
EcoRV	GATATC	1 cut(s)	600
FaeI	CATG	2 cut(s)	21, 406
FaiI	YATR	8 cut(s)	19, 158, 404, 546, 673, 675, 681, 683
FaqI	GGGAC	2 cut(s)	213, 563
FatI	CATG	2 cut(s)	17, 402
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	162, 165
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	2 cut(s)	162, 165
FspBI	CTAG	2 cut(s)	128, 575
GluI	GCNGC	2 cut(s)	162, 165
Hin1II	CATG	2 cut(s)	21, 406
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	422, 524, 531
HphI	GGTGA	3 cut(s)	119, 142, 509
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	184, 536, 604, 639
Hpy188III	TCNNGA	6 cut(s)	35, 279, 509, 528, 632, 689
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	85, 233
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	21, 406
Kzo9I	GATC	2 cut(s)	511, 634
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	9 cut(s)	38, 65, 90, 264, 443, 506, 533, 617, 702
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	361, 375
MaeI	CTAG	2 cut(s)	128, 575
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	513, 636
MboI	GATC	2 cut(s)	511, 634
MboII	GAAGA	4 cut(s)	53, 271, 506, 703
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	6 cut(s)	42, 194, 296, 318, 537, 584
MnlI	CCTC	5 cut(s)	42, 163, 428, 494, 563
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	53, 521
MvaI	CCWGG	2 cut(s)	53, 521
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	2 cut(s)	511, 634
NlaIII	CATG	2 cut(s)	21, 406
NlaIV	GGNNCC	3 cut(s)	289, 551, 591
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	498
PciI	ACATGT	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	422, 524, 531
PkrI	GCNGC	2 cut(s)	163, 166
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	51, 519
PspGI	CCWGG	2 cut(s)	51, 519
PspN4I	GGNNCC	3 cut(s)	289, 551, 591
PspPI	GGNCC	2 cut(s)	550, 589
PspPPI	RGGWCCY	1 cut(s)	550
PspXI	VCTCGAGB	1 cut(s)	498
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	2 cut(s)	162, 165
Sau3AI	GATC	2 cut(s)	511, 634
Sau96I	GGNCC	2 cut(s)	550, 589
ScrFI	CCNGG	2 cut(s)	53, 521
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	129, 155, 208, 244, 330, 452, 555
SfaNI	GCATC	2 cut(s)	361, 375
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	46
SinI	GGWCC	2 cut(s)	550, 589
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	3 cut(s)	82, 498, 554
SmoI	CTYRAG	3 cut(s)	82, 498, 554
Sse9I	AATT	6 cut(s)	42, 194, 296, 318, 537, 584
SsiI	CCGC	2 cut(s)	164, 374
SspMI	CTAG	2 cut(s)	128, 575
StyD4I	CCNGG	2 cut(s)	51, 519
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	7 cut(s)	46, 237, 349, 420, 435, 499, 527
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	42, 194, 296, 318, 537, 584
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	422, 524, 531
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	201, 393
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	550, 589
XapI	RAATTY	2 cut(s)	42, 296
XceI	RCATGY	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	128, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.