Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020585

Physical Location & Seq

Genomic Coordinates Reverse (-)

8097939 .. 8098822

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACGCATATTGGAGAGCACATAATATTGTGAAGAGATACAAGGGCAAACTCATTGCTTGGGATGTTGTTAACGAAAATTTGCATTTTGATTTCTTTGAAAGTAGGATTGGTGCAGCAGCTTCAGGCATTATGTATAATTGGGCTCTTAAAGCTGATGGAGCAACCTCTTTATTCTTGAATGATTTCAATACCATTGAGGATAGCAGAGATTGGAAAGCCTCGCCAAAAGCGTACATTAACAGGCTCAGAGGGATTAAAAGGGCATGGTACTTGGAGCAGATTCTAAGGGAGGTACATTCTCACCCACAAATTCAAGGAATTGTGATTTGGTCTGCATGGCAACCTCAAGGATGTTACAGAATGTGCTTAACCGATTACAATTTCAATAAATTGGCCACTGGTAATGTTGTGGACAAGTTACTACATGAATGGGGTTTGTGGGCTTTCGATTCGACTTCTGCCACAACAGACGCTAATGGTTTCTTTGAGGCCTCCCTCTTCCACGGGGAATCGGGGATTATGAAGTTAACATTACTCACCCCTGTCACAAATTCCTCCTTGGTTCACAGATTCAATGTGGCACCAAAATCTGAGTCCCAGGAACCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

204

Amino Acids

23.36

Weight (kDa)

7.06

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	8 - 73	4.1e-09	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020585)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252831
rosa_laevigata	RLG00000015062
rosa_rugosa	Rorug05G0538900 Rorug05G0539000
rosa_samantha	Rh6AG055000 Rh6BG049100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	3 cut(s)	79, 312, 553
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	236, 272, 297
AgsI	TTSAA	6 cut(s)	101, 181, 190, 317, 388, 577
AjnI	CCWGG	1 cut(s)	600
AjuI	GAANNNNNNNTTGG	4 cut(s)	93, 125, 313, 345
AluBI	AGCT	2 cut(s)	122, 155
AluI	AGCT	2 cut(s)	122, 155
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	396, 492
ApeKI	GCWGC	2 cut(s)	116, 119
ApoI	RAATTY	3 cut(s)	79, 312, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp700I	GAANNNNTTC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	296, 532
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	128, 131
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	602
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
Bme1390I	CCNGG	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	585, 606
BmrFI	CCNGG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	505, 561, 600
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	3 cut(s)	505, 561, 600
BseGI	GGATG	2 cut(s)	70, 359
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	262, 585
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	128, 131
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	398, 494
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	398, 494
Bsp1286I	GDGCHC	2 cut(s)	22, 148
BspANI	GGCC	2 cut(s)	398, 494
BspCNI	CTCAG	2 cut(s)	261, 586
BspLI	GGNNCC	2 cut(s)	585, 606
BspT107I	GGYRCC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	505, 561, 600
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	602
Bst6I	CTCTTC	2 cut(s)	29, 506
BstDEI	CTNAG	3 cut(s)	248, 287, 594
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	70, 359
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstNI	CCWGG	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	128, 131
BsuRI	GGCC	2 cut(s)	398, 494
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	70, 359
BtsIMutI	CAGTG	1 cut(s)	399
CseI	GACGC	2 cut(s)	14, 482
Csp6I	GTAC	3 cut(s)	235, 271, 296
CviAII	CATG	3 cut(s)	267, 339, 428
CviJI	RGCY	8 cut(s)	122, 146, 155, 221, 247, 398, 446, 494
CviKI_1	RGCY	8 cut(s)	122, 146, 155, 221, 247, 398, 446, 494
CviQI	GTAC	3 cut(s)	235, 271, 296
DdeI	CTNAG	3 cut(s)	248, 287, 594
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	29, 506
EarI	CTCTTC	2 cut(s)	29, 506
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	270, 342, 431
FaiI	YATR	8 cut(s)	10, 24, 134, 138, 268, 340, 429, 524
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	3 cut(s)	266, 338, 427
Fnu4HI	GCNGC	2 cut(s)	117, 120
FokI	GGATG	2 cut(s)	77, 366
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	117, 120
GluI	GCNGC	2 cut(s)	117, 120
HaeIII	GGCC	2 cut(s)	398, 494
HgaI	GACGC	2 cut(s)	14, 482
Hin1II	CATG	3 cut(s)	270, 342, 431
HincII	GTYRAC	2 cut(s)	73, 531
HindII	GTYRAC	2 cut(s)	73, 531
HinfI	GANTC	5 cut(s)	283, 452, 512, 573, 596
HpaI	GTTAAC	2 cut(s)	73, 531
HphI	GGTGA	2 cut(s)	296, 532
Hpy166II	GTNNAC	4 cut(s)	73, 415, 531, 568
Hpy188I	TCNGA	2 cut(s)	251, 595
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	4 cut(s)	73, 415, 531, 568
HpyCH4V	TGCA	3 cut(s)	85, 116, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpyF3I	CTNAG	3 cut(s)	248, 287, 594
Hsp92II	CATG	3 cut(s)	270, 342, 431
KspAI	GTTAAC	2 cut(s)	73, 531
LmnI	GCTCC	2 cut(s)	161, 277
LpnPI	CCDG	5 cut(s)	111, 229, 387, 558, 587
Lsp1109I	GCAGC	2 cut(s)	128, 131
MaeIII	GTNAC	3 cut(s)	356, 420, 547
MboII	GAAGA	2 cut(s)	46, 493
MhlI	GDGCHC	2 cut(s)	22, 148
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	7 cut(s)	79, 139, 312, 321, 382, 392, 553
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	605
Mox20I	TGGCCA	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	6 cut(s)	72, 150, 240, 258, 371, 530
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NlaIII	CATG	3 cut(s)	270, 342, 431
NlaIV	GGNNCC	2 cut(s)	585, 606
NmuCI	GTSAC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	283, 452, 512, 573
PkrI	GCNGC	2 cut(s)	118, 121
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	585, 606
RsaI	GTAC	3 cut(s)	236, 272, 297
RsaNI	GTAC	3 cut(s)	235, 271, 296
SaqAI	TTAA	6 cut(s)	72, 150, 240, 258, 371, 530
SatI	GCNGC	2 cut(s)	117, 120
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	22, 148
SetI	ASST	5 cut(s)	124, 157, 170, 297, 349
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	7 cut(s)	79, 139, 312, 321, 382, 392, 553
SseBI	AGGCCT	1 cut(s)	494
SspI	AATATT	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	2 cut(s)	450, 455
TasI	AATT	7 cut(s)	79, 139, 312, 321, 382, 392, 553
TfiI	GAWTC	4 cut(s)	283, 452, 512, 573
Tru1I	TTAA	6 cut(s)	72, 150, 240, 258, 371, 530
Tru9I	TTAA	6 cut(s)	72, 150, 240, 258, 371, 530
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	116, 119
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	444, 539
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	3 cut(s)	79, 312, 553
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.