Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018204

Physical Location & Seq

Genomic Coordinates Forward (+)

65947759 .. 65948567

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCGTCTCAGAAGAAATCGATCACCCTGAAGAGCTCCGACGGCGAGAGCTTCAATGTCGAGGAGGCGGTGGCGTTCGAATCGGTGACCATCAAGAACATGGTGGAGGACATCGGCGCCGAGAATGCGATCCCCTTGCCCAACGTCACTGGCTTCATCTTGGGGAAGGTGATCGAGTACTGCCGGAAGCACGTCGAGGAGGGCAAAGATTCCGACAAGGACAGAGCCGGCGATTTCGTCAAGCCCGGCGACTCGCCTCTCAAGGCTTGGGACGCCGATTTCGTCAAGGTCGAGCAGAGTGTGCTGTTTGACATCATTTTGGCTGCAAACTATCTGGACATTAAGGGGCTGCTGGATTTGACGTGCCAGACTGTGGCAGACATGATCAAGGGGAAGAGTGCAGAAGAGATTCGCAAGCATTTCAACATCAAGAATGACTATACTCCAGAGGAAGAAGAGGAGGTTCGGAGGGAGAATCAATGGGCATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

165

Amino Acids

18.43

Weight (kDa)

4.67

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	2.1e-27	Skp1 family, tetramerisation domain
Skp1	PF01466	115 - 162	1.7e-30	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018204)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251761
rosa_laevigata	RLG00000015432 RLG00000015436
rosa_multiflora	Rmu_sc0029157.1_g000001 Rmu_ssc0000213.1_g000100 Rmu_ssc0000213.1_g000109
rosa_roxburghii	Rroxscaffold_7G00216430 Rroxscaffold_7G00216450
rosa_rugosa	Rorug05G0503800
rosa_samantha	Rh6AG014400
rosa_wichuraiana	Rw6G001440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	2 cut(s)	117, 273
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	55, 424
AjiI	CACGTC	2 cut(s)	193, 363
AluBI	AGCT	2 cut(s)	36, 51
AluI	AGCT	2 cut(s)	36, 51
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	323, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	16, 97, 181
AsuII	TTCGAA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	310, 336
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	2 cut(s)	324, 350
BlsI	GCNGC	2 cut(s)	325, 351
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	246
BmgBI	CACGTC	2 cut(s)	193, 363
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	117, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	3 cut(s)	77, 212, 473
BseXI	GCAGC	2 cut(s)	310, 336
BsgI	GTGCAG	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	184, 228, 246
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	21, 129, 171, 384
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	4 cut(s)	21, 129, 171, 384
BssNI	GRCGYC	2 cut(s)	117, 273
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	4 cut(s)	26, 389, 399, 450
BstACI	GRCGYC	2 cut(s)	117, 273
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	229, 416
BstDEI	CTNAG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	4 cut(s)	24, 132, 174, 387
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	21, 129, 171, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 125, 272, 301
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	310, 336
Bsu15I	ATCGAT	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	20
BtrI	CACGTC	2 cut(s)	193, 363
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	229, 416
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	100, 382
CviJI	RGCY	8 cut(s)	36, 51, 153, 227, 244, 266, 323, 349
CviKI_1	RGCY	8 cut(s)	36, 51, 153, 227, 244, 266, 323, 349
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	9
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	4 cut(s)	23, 131, 173, 386
DpnII	GATC	4 cut(s)	21, 129, 171, 384
Eam1104I	CTCTTC	4 cut(s)	26, 389, 399, 450
EarI	CTCTTC	4 cut(s)	26, 389, 399, 450
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	103, 385
FaiI	YATR	3 cut(s)	101, 383, 441
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	99, 381
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	324, 350
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	324, 350
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	324, 350
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	3 cut(s)	184, 228, 246
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	2 cut(s)	117, 273
Hin1II	CATG	2 cut(s)	103, 385
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	5 cut(s)	80, 209, 251, 409, 475
HpaII	CCGG	3 cut(s)	184, 228, 246
HphI	GGTGA	3 cut(s)	16, 97, 181
Hpy188I	TCNGA	4 cut(s)	12, 40, 214, 468
Hpy188III	TCNNGA	4 cut(s)	94, 335, 430, 446
Hpy99I	CGWCG	2 cut(s)	44, 197
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	3 cut(s)	144, 192, 362
HpyCH4V	TGCA	2 cut(s)	326, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 125, 272, 301
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	3 cut(s)	144, 192, 362
Hsp92I	GRCGYC	2 cut(s)	117, 273
Hsp92II	CATG	2 cut(s)	103, 385
HspAI	GCGC	1 cut(s)	117
KasI	GGCGCC	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	4 cut(s)	21, 129, 171, 384
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	9 cut(s)	41, 135, 197, 241, 259, 320, 338, 380, 459
Lsp1109I	GCAGC	2 cut(s)	310, 336
MaeII	ACGT	3 cut(s)	144, 192, 362
MaeIII	GTNAC	2 cut(s)	85, 145
MalI	GATC	4 cut(s)	23, 131, 173, 386
MboI	GATC	4 cut(s)	21, 129, 171, 384
MboII	GAAGA	6 cut(s)	25, 43, 406, 416, 464, 467
MhlI	GDGCHC	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	63, 237
MroNI	GCCGGC	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	342
MspI	CCGG	3 cut(s)	184, 228, 246
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	42, 125, 272, 301
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	4 cut(s)	21, 129, 171, 384
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	103, 385
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	85, 145
NspV	TTCGAA	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 288
PctI	GAATGC	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	4 cut(s)	80, 209, 409, 475
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	325, 351
PleI	GAGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	324, 350
Sau3AI	GATC	4 cut(s)	21, 129, 171, 384
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 53, 147, 171, 195, 291, 365, 465
SfoI	GGCGCC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	3 cut(s)	147, 195, 365
TaqI	TCGA	6 cut(s)	20, 60, 78, 174, 195, 291
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	4 cut(s)	80, 209, 409, 475
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	85, 145
TseI	GCWGC	2 cut(s)	323, 349
Tsp45I	GTSAC	2 cut(s)	85, 145
TspDTI	ATGAA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.