Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

68647329 .. 68649695

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0503800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGATGCAAGTTCTCAAATGCTAAAACCCAAAAGGCAGAAGTTGGATGGGGGAGAAGAGAATAGAGAGATGGAAGGAGGCATGAAGAGTTTAAGCAATTTACCTGATGTGGTTCTTGAAAAAATTCTCTCCTTGCTTTCGACAGAGAATGCTATCAGAACAAGCATACTTTCGAAAAGATGGGAATACCTATGGACATCGATTCCCAAGCTCAACTTTTTTCAAGGGACTCTTAATAAGAGAACTGCCATGGTGAATGCTGTGGAAAGAGCACTTATGCTTCGTCGTGGTGTTGATATAAAAAAGTTCACTCTTTGCTTTGAAGTGCTAGGTGATACATCTCTTCTTAATCCATGGATCTCTGCCATAGTAAGGCTCAATGTTGAAGAGCTTTTTCTTGGCCTGTATAGCTTGAATGGACCGCTTTGTTTGCCTCATTCTTTGTTTAGTTCCTCAACACTGAAGGACTTGCAACTAGATGTGCCCTTTATTTTCAAAGTTCCTTCTACTGTTTGTCTCTCAAGTTTAAGGAGATTGACACTTAGGTCTGTGGTGTTTTCTGATGAATACTCTACCCAGCAACTCTTTTCTGGTTGTCCAGTTCTTGAGAAATTATCTCTACATAACTGCAATTGGGGGAATCTCAAGTTTGTGAGTATTTGTGCTCCAAAGCTTTTGAGATTGATCATAAATGAAAGTGATTTGCAAATTTCCAAAGATGCAGGCGGTTGCCGGATTATGGTGTTTGGTGTCAGTCTTACATATTTTTCTTATGCGGGTGAATTCCTAAATGAATATACCTTTCATAGCTCATCAGTAAATCAGGCTGAGATTAATGCTTGTCCTACTAAGATGTGGAGACATTTGAGTTACCGATTGTATAAGCTTTTTAGAGGGCTATCTAGTCTGAAGATACTAACTACCTGTTCTTATTTCTTTAAGGTCATGCTGGCTAATGTATCAGAGCTGCTTGCCCAGATGCCCTTGTTCAATGATCTAACCACGTTGGTATTGGATTCAGTACGAGTAGATCTTGGTTGTGAAGGACTATTGAGGATGCTCCAAAACTGTCCCTGTCTTCAAACTCTCGTATTCAGTGAGGGGATTAGCCTGTCCTCTGGTGATGCAAATGATGATGGGGTTTTGGACCCACTGCCTCCTTGTTTCTTGATAAGTCTCAAAGAGATTAAAGTCTATGCATTTTATGGAGATGAGGATGAAATTTATGCAGTAAAGAGTTTGCTTAAGACTGCAATGGTATTGGAGAAGGTGATTGTAACTTTCGCTAAGTCTCTTGAAGGAGGACCAGAGGAGATAAATGATGTTGGCAGACAGTTGAGTGATTTCCCAATGGGGTCAGAAATCTGTGAAATTGTTCTTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

462

Amino Acids

51.85

Weight (kDa)

5.79

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 70	2.8e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	96 - 366	2.9e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	117 - 235	1e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
AciI	CCGC	3 cut(s)	422, 726, 776
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	4 cut(s)	123, 708, 782, 1221
AcuI	CTGAAG	3 cut(s)	482, 929, 1364
AfaI	GTAC	2 cut(s)	1023, 1385
AfiI	CCNNNNNNNGG	2 cut(s)	372, 739
AflII	CTTAAG	1 cut(s)	1244
AgsI	TTSAA	9 cut(s)	119, 224, 323, 386, 415, 496, 991, 1082, 1298
AluBI	AGCT	7 cut(s)	211, 391, 411, 673, 810, 886, 967
AluI	AGCT	7 cut(s)	211, 391, 411, 673, 810, 886, 967
Alw21I	GWGCWC	2 cut(s)	274, 667
Alw26I	GTCTC	4 cut(s)	521, 853, 1181, 1296
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	967
ApoI	RAATTY	4 cut(s)	123, 708, 782, 1221
AseI	ATTAAT	1 cut(s)	834
Asp700I	GAANNNNTTC	2 cut(s)	123, 1374
AspS9I	GGNCC	3 cut(s)	419, 1147, 1304
AsuHPI	GGTGA	5 cut(s)	265, 344, 791, 1133, 1282
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	419, 1147, 1304
BaeGI	GKGCMC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	2 cut(s)	274, 667
BbvI	GCAGC	1 cut(s)	954
BccI	CCATC	4 cut(s)	41, 64, 174, 1130
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	4 cut(s)	521, 853, 1181, 1296
BfaI	CTAG	3 cut(s)	329, 476, 903
BfrI	CTTAAG	1 cut(s)	1244
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	1 cut(s)	968
BlsI	GCNGC	1 cut(s)	969
BmcAI	AGTACT	1 cut(s)	1385
Bme18I	GGWCC	3 cut(s)	419, 1147, 1304
BmgT120I	GGNCC	3 cut(s)	419, 1147, 1304
BmiI	GGNNCC	1 cut(s)	1149
BmsI	GCATC	4 cut(s)	709, 969, 1047, 1114
BpiI	GAAGAC	1 cut(s)	1070
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	505, 626, 629
Bsa29I	ATCGAT	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	249, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 739
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	1260
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	249, 353
BseGI	GGATG	4 cut(s)	10, 52, 1062, 1222
BseLI	CCNNNNNNNGG	2 cut(s)	372, 739
BseMI	GCAATG	1 cut(s)	1260
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	1325
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	954
BseYI	CCCAGC	1 cut(s)	576
BshFI	GGCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	274, 667
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	2 cut(s)	241, 1056
BslI	CCNNNNNNNGG	2 cut(s)	372, 739
BsmAI	GTCTC	4 cut(s)	521, 853, 1181, 1296
BsmFI	GGGAC	2 cut(s)	241, 1056
BsmI	GAATGC	2 cut(s)	154, 262
BsnI	GGCC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	274, 486, 667
Bsp143I	GATC	4 cut(s)	357, 684, 994, 1030
Bsp19I	CCATGG	2 cut(s)	249, 353
BspACI	CCGC	3 cut(s)	422, 726, 776
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	820
BspDI	ATCGAT	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	1149
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	1244
BsrDI	GCAATG	1 cut(s)	1260
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	249, 353
BssMI	GATC	4 cut(s)	357, 684, 994, 1030
BssT1I	CCWWGG	2 cut(s)	249, 353
Bst4CI	ACNGT	3 cut(s)	511, 1070, 1335
Bst6I	CTCTTC	4 cut(s)	51, 80, 348, 381
BstAFI	CTTAAG	1 cut(s)	1244
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	724, 951, 972
BstDEI	CTNAG	4 cut(s)	542, 828, 849, 1287
BstDSI	CCRYGG	2 cut(s)	249, 353
BstF5I	GGATG	4 cut(s)	10, 52, 1062, 1222
BstKTI	GATC	4 cut(s)	360, 687, 997, 1033
BstMAI	GTCTC	4 cut(s)	521, 853, 1181, 1296
BstMBI	GATC	4 cut(s)	357, 684, 994, 1030
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 430
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	954
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	357, 1030
BstYI	RGATCY	2 cut(s)	357, 1030
Bsu15I	ATCGAT	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	200
BtgI	CCRYGG	2 cut(s)	249, 353
BtsCI	GGATG	4 cut(s)	10, 52, 1062, 1222
BtsI	GCAGTG	1 cut(s)	1151
BtsIMutI	CAGTG	3 cut(s)	458, 1102, 1151
Cac8I	GCNNGC	3 cut(s)	724, 951, 972
Cfr13I	GGNCC	3 cut(s)	419, 1147, 1304
ClaI	ATCGAT	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	1022, 1384
CviAII	CATG	4 cut(s)	82, 250, 354, 946
CviQI	GTAC	2 cut(s)	1022, 1384
DdeI	CTNAG	4 cut(s)	542, 828, 849, 1287
DpnI	GATC	4 cut(s)	359, 686, 996, 1032
DpnII	GATC	4 cut(s)	357, 684, 994, 1030
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
Eam1104I	CTCTTC	4 cut(s)	51, 80, 348, 381
EarI	CTCTTC	4 cut(s)	51, 80, 348, 381
Eco130I	CCWWGG	2 cut(s)	249, 353
Eco47I	GGWCC	3 cut(s)	419, 1147, 1304
Eco57I	CTGAAG	3 cut(s)	482, 929, 1364
EcoRI	GAATTC	1 cut(s)	782
EcoT14I	CCWWGG	2 cut(s)	249, 353
EcoT22I	ATGCAT	1 cut(s)	1201
ErhI	CCWWGG	2 cut(s)	249, 353
FaeI	CATG	4 cut(s)	85, 253, 357, 949
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 216, 248
FaqI	GGGAC	2 cut(s)	241, 1056
FatI	CATG	4 cut(s)	81, 249, 353, 945
FauI	CCCGC	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	968
FokI	GGATG	4 cut(s)	17, 59, 1069, 1229
Fsp4HI	GCNGC	1 cut(s)	968
FspBI	CTAG	3 cut(s)	329, 476, 903
GluI	GCNGC	1 cut(s)	968
GsaI	CCCAGC	1 cut(s)	580
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	1 cut(s)	733
Hin1II	CATG	4 cut(s)	85, 253, 357, 949
HindIII	AAGCTT	2 cut(s)	671, 884
HinfI	GANTC	4 cut(s)	202, 229, 640, 1016
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	5 cut(s)	265, 344, 791, 1133, 1282
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	5 cut(s)	158, 562, 909, 964, 1360
Hpy188III	TCNNGA	4 cut(s)	116, 605, 1168, 1295
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	6 cut(s)	68, 457, 513, 1037, 1261, 1292
HpyCH4III	ACNGT	3 cut(s)	511, 1070, 1335
HpyCH4IV	ACGT	1 cut(s)	1004
HpyCH4V	TGCA	9 cut(s)	8, 472, 630, 706, 722, 1127, 1199, 1229, 1253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 430
HpyF3I	CTNAG	4 cut(s)	542, 828, 849, 1287
HpySE526I	ACGT	1 cut(s)	1004
Hsp92II	CATG	4 cut(s)	85, 253, 357, 949
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	357, 684, 994, 1030
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	670, 1065
Lsp1109I	GCAGC	1 cut(s)	954
LweI	GCATC	4 cut(s)	709, 969, 1047, 1114
MaeI	CTAG	3 cut(s)	329, 476, 903
MaeII	ACGT	1 cut(s)	1004
MaeIII	GTNAC	2 cut(s)	869, 1276
MalI	GATC	4 cut(s)	359, 686, 996, 1032
MboI	GATC	4 cut(s)	357, 684, 994, 1030
MboII	GAAGA	7 cut(s)	68, 97, 335, 398, 922, 1070, 1370
MfeI	CAATTG	1 cut(s)	631
MflI	RGATCY	2 cut(s)	357, 1030
MhlI	GDGCHC	3 cut(s)	274, 486, 667
MluCI	AATT	8 cut(s)	97, 123, 611, 631, 708, 782, 1221, 1371
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	1201
MroXI	GAANNNNTTC	2 cut(s)	123, 1374
MseI	TTAA	8 cut(s)	92, 234, 348, 527, 834, 939, 1188, 1245
MspCI	CTTAAG	1 cut(s)	1244
MspI	CCGG	1 cut(s)	733
MunI	CAATTG	1 cut(s)	631
Mva1269I	GAATGC	2 cut(s)	154, 262
MwoI	GCNNNNNNNGC	2 cut(s)	408, 430
NcoI	CCATGG	2 cut(s)	249, 353
NdeII	GATC	4 cut(s)	357, 684, 994, 1030
NlaIII	CATG	4 cut(s)	85, 253, 357, 949
NlaIV	GGNNCC	1 cut(s)	1149
NsiI	ATGCAT	1 cut(s)	1201
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	2 cut(s)	154, 262
PdmI	GAANNNNTTC	2 cut(s)	123, 1374
PfeI	GAWTC	3 cut(s)	202, 640, 1016
PkrI	GCNGC	1 cut(s)	969
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	834
PspFI	CCCAGC	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	1149
PspPI	GGNCC	3 cut(s)	419, 1147, 1304
PsuI	RGATCY	2 cut(s)	357, 1030
RsaI	GTAC	2 cut(s)	1023, 1385
RsaNI	GTAC	2 cut(s)	1022, 1384
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	8 cut(s)	92, 234, 348, 527, 834, 939, 1188, 1245
SatI	GCNGC	1 cut(s)	968
Sau3AI	GATC	4 cut(s)	357, 684, 994, 1030
Sau96I	GGNCC	3 cut(s)	419, 1147, 1304
ScaI	AGTACT	1 cut(s)	1385
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	3 cut(s)	274, 486, 667
SfaNI	GCATC	4 cut(s)	709, 969, 1047, 1114
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	3 cut(s)	419, 1147, 1304
SmlI	CTYRAG	4 cut(s)	520, 605, 644, 1244
SmoI	CTYRAG	4 cut(s)	520, 605, 644, 1244
Sse9I	AATT	8 cut(s)	97, 123, 611, 631, 708, 782, 1221, 1371
SsiI	CCGC	3 cut(s)	422, 726, 776
SspMI	CTAG	3 cut(s)	329, 476, 903
StyI	CCWWGG	2 cut(s)	249, 353
TaaI	ACNGT	3 cut(s)	511, 1070, 1335
TaiI	ACGT	1 cut(s)	1007
TaqI	TCGA	3 cut(s)	140, 173, 200
TasI	AATT	8 cut(s)	97, 123, 611, 631, 708, 782, 1221, 1371
TatI	WGTACW	1 cut(s)	1383
TfiI	GAWTC	3 cut(s)	202, 640, 1016
Tru1I	TTAA	8 cut(s)	92, 234, 348, 527, 834, 939, 1188, 1245
Tru9I	TTAA	8 cut(s)	92, 234, 348, 527, 834, 939, 1188, 1245
TscAI	CASTG	3 cut(s)	465, 1102, 1158
TseI	GCWGC	1 cut(s)	967
TspDTI	ATGAA	6 cut(s)	98, 579, 708, 794, 807, 1233
TspRI	CASTG	3 cut(s)	465, 1102, 1158
Vha464I	CTTAAG	1 cut(s)	1244
VpaK11BI	GGWCC	3 cut(s)	419, 1147, 1304
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	4 cut(s)	123, 708, 782, 1221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmnI	GAANNNNTTC	2 cut(s)	123, 1374
XspI	CTAG	3 cut(s)	329, 476, 903
ZrmI	AGTACT	1 cut(s)	1385
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.