Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

15202830 .. 15203890

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCATTGAGGCTCAGATGTATTCGAAAAATCTTGGGTTTCCATTGTTTGGCTCACAGGATTGGATGGTGGAAAATTGTGGGGGTGGTATTGGTGGGTTCAGTCAGTTTAGTTTCAATGCTCAACAGAAACACCAACTTCAACAACAATTTCAGCAGCAACAGCAACAACTACAACTACAAAACCAGCAGCAGATAATGGATCAAAATCTCTGCTTTGAAAACAGTATTCCTGTCCCCACTTTGGAAAGCAACAGCAGCAACATTATGGCCTCCTCCTTTTCTCAAGCATTTGAAGCTCAGGCAGCCGAGCAGAGGCAAGAGATAGATCAGTACATCAGATTACAGAGTGAGAGATTGAGAATGATGCTGCGAGAGCAGAGAAAGCAGCAACTCGCAATGCTGCTGAAGAAAATAGACTCCAAGACACAAGTACTTTTAAAGCAGAAAGACGAAGAAATCACACAAGCAAACAGAAGACAAATGGAGCTCGAAGATTTTCTCAGAAGATTGGAGGCAGAAAACCAGGCATGGCAAAGAGTGGCACAGGAAAACGAAGCCATGGTCATGACATTAAACAACACACTAGAACAGTACAGGGAGAGGGCCATGTTTTGCCTCGTGAATGGTGGAGAGGATGCAGAGTCCTGCTGTGACAATTACAGAGAAGAAGAAGAAGGAGAGAGTGATGGAGGAGGAGGTGAAAAGATGAAGGCTTGCAGAAGATGTAATTCTGGGAGTTCGTGTGTGCTGTTTCTTCCCTGCAGGCACCTGTGTTCATGCAAAGATTGTGAGGCCGTTCTGGATTACTGCCCGGTTTGTAGAACACCAAAGAAGGCCAGCATTGAGGCTTTGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

5.02

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	768
AccB7I	CCANNNNNTGG	1 cut(s)	50
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	335, 435, 596
AfiI	CCNNNNNNNGG	3 cut(s)	50, 244, 315
AgsI	TTSAA	4 cut(s)	118, 143, 221, 296
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	2 cut(s)	299, 490
AluI	AGCT	2 cut(s)	299, 490
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	5 cut(s)	3, 270, 606, 795, 837
ApeKI	GCWGC	7 cut(s)	157, 190, 258, 305, 370, 388, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	1 cut(s)	815
AsuHPI	GGTGA	1 cut(s)	713
AsuII	TTCGAA	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	1 cut(s)	492
BauI	CACGAG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	7 cut(s)	169, 202, 270, 317, 357, 390, 400
BccI	CCATC	2 cut(s)	61, 683
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	815
BfaI	CTAG	2 cut(s)	587, 862
BfmI	CTRYAG	1 cut(s)	763
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	7 cut(s)	158, 191, 259, 306, 371, 389, 404
BlsI	GCNGC	7 cut(s)	159, 192, 260, 307, 372, 390, 405
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	527, 815
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	2 cut(s)	527, 815
BmsI	GCATC	2 cut(s)	357, 628
BpiI	GAAGAC	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 244, 315
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	72, 643
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	50, 244, 315
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	3 cut(s)	29, 314, 517
BseRI	GAGGAG	3 cut(s)	265, 708, 711
BseXI	GCAGC	7 cut(s)	169, 202, 270, 317, 357, 390, 400
BshFI	GGCC	5 cut(s)	5, 272, 608, 797, 839
BshNI	GGYRCC	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	50, 244, 315
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	5, 272, 608, 797, 839
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	202, 328
Bsp19I	CCATGG	1 cut(s)	561
BspANI	GGCC	5 cut(s)	5, 272, 608, 797, 839
BspCNI	CTCAG	3 cut(s)	28, 313, 516
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	770
BspMAI	CTGCAG	1 cut(s)	767
BspPI	GGATC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	2 cut(s)	202, 328
BssSI	CACGAG	1 cut(s)	620
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	227, 594
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	718, 767, 841
BstDEI	CTNAG	3 cut(s)	15, 300, 503
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	72, 643
BstKTI	GATC	2 cut(s)	205, 331
BstMBI	GATC	2 cut(s)	202, 328
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 163, 258, 296, 305, 376, 385
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	525, 813
BstSFI	CTRYAG	1 cut(s)	763
BstV1I	GCAGC	7 cut(s)	169, 202, 270, 317, 357, 390, 400
BstV2I	GAAGAC	1 cut(s)	484
BsuRI	GGCC	5 cut(s)	5, 272, 608, 797, 839
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	72, 643
Cac8I	GCNNGC	3 cut(s)	718, 767, 841
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	334, 434, 595
CviAII	CATG	5 cut(s)	531, 562, 568, 610, 780
CviQI	GTAC	3 cut(s)	334, 434, 595
DdeI	CTNAG	3 cut(s)	15, 300, 503
DpnI	GATC	2 cut(s)	204, 330
DpnII	GATC	2 cut(s)	202, 328
DraI	TTTAAA	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	534, 565, 571, 613, 783
FaiI	YATR	6 cut(s)	269, 532, 563, 569, 611, 781
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	5 cut(s)	530, 561, 567, 609, 779
Fnu4HI	GCNGC	7 cut(s)	158, 191, 259, 306, 371, 389, 404
FokI	GGATG	2 cut(s)	79, 650
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	7 cut(s)	158, 191, 259, 306, 371, 389, 404
FspBI	CTAG	2 cut(s)	587, 862
GluI	GCNGC	7 cut(s)	158, 191, 259, 306, 371, 389, 404
HaeIII	GGCC	5 cut(s)	5, 272, 608, 797, 839
HapII	CCGG	1 cut(s)	815
Hin1II	CATG	5 cut(s)	534, 565, 571, 613, 783
HinfI	GANTC	2 cut(s)	419, 644
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	1 cut(s)	713
Hpy188I	TCNGA	3 cut(s)	18, 341, 506
Hpy188III	TCNNGA	3 cut(s)	568, 622, 803
HpyAV	CCTTC	3 cut(s)	671, 706, 829
HpyCH4III	ACNGT	2 cut(s)	227, 594
HpyCH4V	TGCA	4 cut(s)	641, 720, 765, 783
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 163, 258, 296, 305, 376, 385
HpyF3I	CTNAG	3 cut(s)	15, 300, 503
Hsp92II	CATG	5 cut(s)	534, 565, 571, 613, 783
Kzo9I	GATC	2 cut(s)	202, 328
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	7 cut(s)	169, 202, 270, 317, 357, 390, 400
LweI	GCATC	2 cut(s)	357, 628
MaeI	CTAG	2 cut(s)	587, 862
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	2 cut(s)	204, 330
MboI	GATC	2 cut(s)	202, 328
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	76, 149, 658, 730
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	413, 653
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	440, 575
MslI	CAYNNNNRTG	1 cut(s)	566
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	2 cut(s)	527, 815
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	7 cut(s)	11, 163, 258, 296, 305, 376, 385
NciI	CCSGG	1 cut(s)	815
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	2 cut(s)	202, 328
NlaIII	CATG	5 cut(s)	534, 565, 571, 613, 783
NlaIV	GGNNCC	1 cut(s)	770
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	26
PagI	TCATGA	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	498
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	7 cut(s)	159, 192, 260, 307, 372, 390, 405
PleI	GAGTC	2 cut(s)	413, 652
PpsI	GAGTC	2 cut(s)	413, 652
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	767
RsaI	GTAC	3 cut(s)	335, 435, 596
RsaNI	GTAC	3 cut(s)	334, 434, 595
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	440, 575
SatI	GCNGC	7 cut(s)	158, 191, 259, 306, 371, 389, 404
Sau3AI	GATC	2 cut(s)	202, 328
Sau96I	GGNCC	1 cut(s)	606
SbfI	CCTGCAGG	1 cut(s)	767
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	2 cut(s)	413, 653
ScrFI	CCNGG	2 cut(s)	527, 815
SdaI	CCTGCAGG	1 cut(s)	767
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	4 cut(s)	301, 492, 703, 774
SfaNI	GCATC	2 cut(s)	357, 628
SfcI	CTRYAG	1 cut(s)	763
SfuI	TTCGAA	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse8387I	CCTGCAGG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	76, 149, 658, 730
SspMI	CTAG	2 cut(s)	587, 862
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	525, 813
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	227, 594
TaqI	TCGA	2 cut(s)	26, 492
TasI	AATT	4 cut(s)	76, 149, 658, 730
TatI	WGTACW	3 cut(s)	333, 433, 594
Tru1I	TTAA	2 cut(s)	440, 575
Tru9I	TTAA	2 cut(s)	440, 575
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	7 cut(s)	157, 190, 258, 305, 370, 388, 403
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	2 cut(s)	725, 768
Van91I	CCANNNNNTGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	587, 862
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.