Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

435200 .. 436174

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000111.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggctattgaagcacagttgtattcagagaatcttgggtttccgatgtttggctcacaatcgcagaatttgatggtggacaacaatggttgtggtggttctggcggtgggtttaatcagttctgttttaatgtccagcagaaaccgccgcagctactacaataccagccaccaccgatgaatcccggtatgcttgttccagctttgcacaacaacaacatcatggcatatactcgacagagtattgcggctcaggaagccaagcaaagacaagagattgatgactatctcagattacagaatgagagattgagattggtgctacaagagcagagaaatcagcaacttgcattgttgatgaagaaaatcgagtccagaacagagctactattgaagcaaaaggatgaagaaatagcacaagcggtgaagaagagaatggagctcgaagatttcttgaggaaattggaggctgaaaaccaagcgtggcaaagagtggctcaggagaacgaagccatcgttgtgtccttaaacaacactcttgaacagttcagagagagagccgcttgtggtgccatggaagatgcagagtcttgctgtgatagtaaacaagaggaggaagaagaagacacaggggattacagaggaggctttaataatggcgtgaacgaagagataaagatgatggtttgcaaaggctgcaattctaaaaggtcgtgtgtcttgttcctcccctgcaggcatctttgttcatgcaaagcctgtgaggctggctttgattcttgtcctgtttgcacaacgccaaagaaggccagcatagaggcattgattttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

277

Amino Acids

31.32

Weight (kDa)

5.09

Isoelectric Point (pI)

70.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	6 cut(s)	105, 146, 149, 248, 422, 561
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	11, 394, 542
AluBI	AGCT	4 cut(s)	154, 203, 385, 442
AluI	AGCT	4 cut(s)	154, 203, 385, 442
Alw21I	GWGCWC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	807
ApeKI	GCWGC	2 cut(s)	151, 696
ApoI	RAATTY	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	163, 683
BccI	CCATC	3 cut(s)	67, 521, 676
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	832
BfmI	CTRYAG	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
BlsI	GCNGC	5 cut(s)	150, 153, 250, 562, 698
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	571, 748
BpiI	GAAGAC	1 cut(s)	630
Bpu10I	CCTNAGC	2 cut(s)	252, 498
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	266, 304, 512
BseRI	GAGGAG	2 cut(s)	626, 657
BseXI	GCAGC	2 cut(s)	163, 683
BshFI	GGCC	1 cut(s)	809
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	6 cut(s)	105, 146, 149, 248, 422, 561
BspANI	GGCC	1 cut(s)	809
BspCNI	CTCAG	3 cut(s)	265, 303, 511
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	18, 546
Bst6I	CTCTTC	2 cut(s)	425, 663
BstAPI	GCANNNNNTGC	1 cut(s)	696
BstC8I	GCNNGC	3 cut(s)	737, 769, 811
BstDEI	CTNAG	3 cut(s)	252, 290, 498
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	163, 683
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	809
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	737, 769, 811
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	223, 574, 750
DdeI	CTNAG	3 cut(s)	252, 290, 498
Eam1104I	CTCTTC	2 cut(s)	425, 663
EarI	CTCTTC	2 cut(s)	425, 663
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	226, 577, 753
FaiI	YATR	7 cut(s)	191, 224, 229, 231, 575, 751, 815
FatI	CATG	3 cut(s)	222, 573, 749
Fnu4HI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
FspBI	CTAG	1 cut(s)	832
GluI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
HaeIII	GGCC	1 cut(s)	809
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	226, 577, 753
HinfI	GANTC	5 cut(s)	31, 181, 371, 587, 776
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	79, 605, 664
Hpy188I	TCNGA	4 cut(s)	28, 45, 293, 551
Hpy188III	TCNNGA	5 cut(s)	254, 375, 454, 500, 539
Hpy8I	GTNNAC	3 cut(s)	79, 605, 664
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	2 cut(s)	18, 546
HpyCH4V	TGCA	8 cut(s)	208, 350, 584, 690, 699, 735, 753, 792
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
HpyF3I	CTNAG	3 cut(s)	252, 290, 498
Hsp92II	CATG	3 cut(s)	226, 577, 753
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	2 cut(s)	163, 683
LweI	GCATC	2 cut(s)	571, 748
MaeI	CTAG	1 cut(s)	832
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	3 cut(s)	67, 461, 700
MlyI	GAGTC	2 cut(s)	380, 596
MnlI	CCTC	9 cut(s)	450, 460, 604, 607, 635, 638, 737, 757, 811
MseI	TTAA	4 cut(s)	114, 129, 527, 651
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	573
NlaIII	CATG	3 cut(s)	226, 577, 753
NlaIV	GGNNCC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	31, 181, 776
PkrI	GCNGC	5 cut(s)	150, 153, 250, 562, 698
PleI	GAGTC	2 cut(s)	379, 595
PpsI	GAGTC	2 cut(s)	379, 595
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	737
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	114, 129, 527, 651
SatI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
SbfI	CCTGCAGG	1 cut(s)	737
SchI	GAGTC	2 cut(s)	380, 596
ScrFI	CCNGG	1 cut(s)	186
SdaI	CCTGCAGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	5 cut(s)	156, 205, 387, 444, 713
SfaNI	GCATC	2 cut(s)	571, 748
SfcI	CTRYAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse8387I	CCTGCAGG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	67, 461, 700
SsiI	CCGC	6 cut(s)	105, 146, 149, 248, 422, 561
SspMI	CTAG	1 cut(s)	832
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	18, 546
TaqI	TCGA	3 cut(s)	235, 369, 444
TasI	AATT	3 cut(s)	67, 461, 700
TauI	GCSGC	3 cut(s)	151, 251, 563
TfiI	GAWTC	3 cut(s)	31, 181, 776
Tru1I	TTAA	4 cut(s)	114, 129, 527, 651
Tru9I	TTAA	4 cut(s)	114, 129, 527, 651
TseI	GCWGC	2 cut(s)	151, 696
TspDTI	ATGAA	4 cut(s)	194, 374, 420, 738
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.