Rh6DG433900

BOI-related E3 ubiquitin-protein ligase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003008
Physical Location & Seq
Forward (+)
61249027 .. 61251180
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG433900.1

Sequence Viewer

Length: 858 bp
ATGGCAGTTCAAGCTCAGACCATGTATTTCTCAGAAAATTTAGGCATGAGTGGCTTTCCACAGCAACAGGATTGGGCTCTGATCAACCCTCCTCCGCTTTCCGATTCCGGGTTTGATCATGACTTCTTTTCCGGCATCATTCCAAACCCTCAACCTTATCAGCAGCAACAAGCTCCTCAGTTTCATCAAAATCTAGAAGCTAACCGGTTAGGAGTTTCTTCTGTTTCTCCTAATTCCACTTGCAATAGCTTCCTTCCCACAACGTCATTATTTCCCGATACTCTGACCGCTCAGCTCGACTTGCAAAGGCGGGAGATAGATTGCATTCTTCAGTTGCAGAATGAGAAGCTGAGATTTGCTTTGCAAGAGCAGAGGAAGCGACAGCTGGCGGCTCTGTTGAGCAACTTCGAGTCGAGGACGTCGAGTTTGATCAGGCAAAAAGAGGAGCACTTATCACAAGCGAGAAAGAGAGCAATGGAGCTTCAAGATTGCTTGAGAAAAGCGGAGATGGAGACCGAGACGTGGCAGAGATTGGCCAAAGCAAACGAGACGACGGTGATGGACCTCAACAACGCGCTCGAACAGGTCAAAGAGAGAATGGTCCTGTGCAGCAACGAAGCCGATGATGCAGAGTCCTTCTGTGGCTCGTGTGAGAAGCAGCAGCAACAAGTGCTTTCAGAAATAGTAGCTCCCAAAAAGCTGGGTTTGGATTGTAAAAGCTGTAATGCTAGAAGGTCGTGCGTGCTTTTTCTTCCTTGCAGACACCTCTGTTCGTGCAAGTTTTGTGAAGCTTTTCTTGATTGCTGCCCCGTGTGTAAATCCACCAAGGAGGCAAGCATGGAGGTCTTTTTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

285

Amino Acids

32.35

Weight (kDa)

5.53

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 237 - 277 2e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 1 cut(s) 575
AciI CCGC 5 cut(s) 95, 288, 310, 389, 503
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 108, 522
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 11, 485
AjiI CACGTC 1 cut(s) 522
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 3 cut(s) 506, 512, 542
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 5 cut(s) 163, 609, 658, 661, 804
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AsiGI ACCGGT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 2 cut(s) 562, 601
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 568
AvaII GGWCC 2 cut(s) 562, 601
BalI TGGCCA 1 cut(s) 536
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 646
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 5 cut(s) 175, 621, 670, 673, 791
BccI CCATC 2 cut(s) 502, 553
BclI TGATCA 3 cut(s) 81, 115, 429
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 3 cut(s) 506, 512, 542
BfaI CTAG 2 cut(s) 194, 729
BisI GCNGC 6 cut(s) 164, 390, 610, 659, 662, 805
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 6 cut(s) 165, 391, 611, 660, 663, 806
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 562, 601
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 562, 601
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 144, 616
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 825
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 522
Bse118I RCCGGY 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 825
BseLI CCNNNNNNNGG 2 cut(s) 108, 522
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 5 cut(s) 29, 45, 191, 305, 341
BseRI GAGGAG 3 cut(s) 81, 165, 458
BseXI GCAGC 5 cut(s) 175, 621, 670, 673, 791
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 1 cut(s) 536
BshTI ACCGGT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 3 cut(s) 108, 132, 205
BslI CCNNNNNNNGG 2 cut(s) 108, 522
BsmAI GTCTC 3 cut(s) 506, 512, 542
BsmBI CGTCTC 2 cut(s) 512, 542
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 1 cut(s) 536
Bso31I GGTCTC 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 79, 450
Bsp143I GATC 3 cut(s) 81, 115, 429
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 5 cut(s) 95, 288, 310, 389, 503
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 5 cut(s) 28, 44, 190, 304, 342
BspFNI CGCG 1 cut(s) 575
BspHI TCATGA 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 825
BssMI GATC 3 cut(s) 81, 115, 429
BssNI GRCGYC 1 cut(s) 419
BssSI CACGAG 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 825
Bst2BI CACGAG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 556
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 387, 743, 835
BstDEI CTNAG 5 cut(s) 15, 31, 177, 291, 350
BstFNI CGCG 1 cut(s) 575
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 3 cut(s) 84, 118, 432
BstMAI GTCTC 3 cut(s) 506, 512, 542
BstMBI GATC 3 cut(s) 81, 115, 429
BstMWI GCNNNNNNNGC 6 cut(s) 11, 51, 301, 376, 626, 670
BstSCI CCNGG 1 cut(s) 107
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 5 cut(s) 175, 621, 670, 673, 791
BstXI CCANNNNNNTGG 1 cut(s) 700
BsuRI GGCC 1 cut(s) 536
BtrI CACGTC 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 387, 743, 835
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 562, 601
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 4 cut(s) 22, 46, 119, 838
DdeI CTNAG 5 cut(s) 15, 31, 177, 291, 350
DpnI GATC 3 cut(s) 83, 117, 431
DpnII GATC 3 cut(s) 81, 115, 429
EaeI YGGCCR 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 825
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 2 cut(s) 562, 601
Eco57I CTGAAG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 825
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 2 cut(s) 512, 542
FaeI CATG 4 cut(s) 25, 49, 122, 841
FaiI YATR 4 cut(s) 23, 47, 120, 839
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FatI CATG 4 cut(s) 21, 45, 118, 837
FauI CCCGC 1 cut(s) 303
FbaI TGATCA 3 cut(s) 81, 115, 429
Fnu4HI GCNGC 6 cut(s) 164, 390, 610, 659, 662, 805
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 164, 390, 610, 659, 662, 805
FspBI CTAG 2 cut(s) 194, 729
GlaI GCGC 1 cut(s) 576
GluI GCNGC 6 cut(s) 164, 390, 610, 659, 662, 805
GsaI CCCAGC 1 cut(s) 704
HaeIII GGCC 1 cut(s) 536
HapII CCGG 3 cut(s) 108, 132, 205
HhaI GCGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 4 cut(s) 25, 49, 122, 841
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 3 cut(s) 104, 410, 632
HpaII CCGG 3 cut(s) 108, 132, 205
HphI GGTGA 1 cut(s) 568
Hpy188I TCNGA 6 cut(s) 18, 34, 81, 103, 285, 679
Hpy188III TCNNGA 5 cut(s) 119, 194, 275, 485, 797
Hpy99I CGWCG 2 cut(s) 424, 556
HpyAV CCTTC 3 cut(s) 263, 646, 726
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 3 cut(s) 263, 419, 521
HpyCH4V TGCA 9 cut(s) 243, 304, 324, 337, 364, 609, 629, 759, 777
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 51, 301, 376, 626, 670
HpyF3I CTNAG 5 cut(s) 15, 31, 177, 291, 350
HpySE526I ACGT 3 cut(s) 263, 419, 521
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 4 cut(s) 25, 49, 122, 841
HspAI GCGC 1 cut(s) 575
Ksp22I TGATCA 3 cut(s) 81, 115, 429
Kzo9I GATC 3 cut(s) 81, 115, 429
LmnI GCTCC 4 cut(s) 178, 445, 478, 694
LpnPI CCDG 9 cut(s) 53, 121, 145, 218, 371, 418, 569, 617, 686
Lsp1109I GCAGC 5 cut(s) 175, 621, 670, 673, 791
LweI GCATC 2 cut(s) 144, 616
MaeI CTAG 2 cut(s) 194, 729
MaeII ACGT 3 cut(s) 263, 419, 521
MalI GATC 3 cut(s) 83, 117, 431
MbiI CCGCTC 1 cut(s) 290
MboI GATC 3 cut(s) 81, 115, 429
MboII GAAGA 3 cut(s) 210, 320, 743
MhlI GDGCHC 2 cut(s) 79, 450
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 2 cut(s) 37, 232
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 419, 641
Mox20I TGGCCA 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 792
MscI TGGCCA 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 108, 132, 205
MspR9I CCNGG 1 cut(s) 109
Mva1269I GAATGC 1 cut(s) 324
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 6 cut(s) 11, 51, 301, 376, 626, 670
NciI CCSGG 1 cut(s) 109
NdeII GATC 3 cut(s) 81, 115, 429
NlaIII CATG 4 cut(s) 25, 49, 122, 841
PagI TCATGA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 6 cut(s) 165, 391, 611, 660, 663, 806
PleI GAGTC 2 cut(s) 418, 640
PpsI GAGTC 2 cut(s) 418, 640
PspFI CCCAGC 1 cut(s) 700
PspPI GGNCC 2 cut(s) 562, 601
PvuII CAGCTG 1 cut(s) 385
SatI GCNGC 6 cut(s) 164, 390, 610, 659, 662, 805
Sau3AI GATC 3 cut(s) 81, 115, 429
Sau96I GGNCC 2 cut(s) 562, 601
SchI GAGTC 2 cut(s) 419, 641
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 79, 450
SfaNI GCATC 2 cut(s) 144, 616
SinI GGWCC 2 cut(s) 562, 601
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 2 cut(s) 37, 232
SsiI CCGC 5 cut(s) 95, 288, 310, 389, 503
SspMI CTAG 2 cut(s) 194, 729
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 3 cut(s) 266, 422, 524
TaqI TCGA 5 cut(s) 297, 408, 413, 422, 579
TaqII GACCGA 1 cut(s) 530
TasI AATT 2 cut(s) 37, 232
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 5 cut(s) 163, 609, 658, 661, 804
TspDTI ATGAA 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 562, 601
XapI RAATTY 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 2 cut(s) 194, 729
ZraI GACGTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.