Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Reverse (-)

330623 .. 331521

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgagtggcttttcacagcaacaggattgggctctgatcaaccctcctcatccgctttccgattccgggtttgatcatgacttcttttccggcatcattccaaaccggcctcaaccttatcagcagcaacaagctcctcagtttcatcaaaatctagaagctaaccggttaggagtttcttctgtttctcctaattccacttgcaatagcttccttcccacaacgtcattatttcccgatactttgaccgctcagctcgacttgcaaaggcgggagatagattgcattcttcagttgcagaatgagaagctgagatttgctttgcaagagcagaggaagcgacagctggcggctctgttgagcaacttcgagtcgaggacgtcaagtttgatgaggcaaaaagaggagcacttatcacaagcgagaaagagagcaatggagcttcaagattgcttgagaaaagcggagatggagaccgagacgtggcagagattggccaaagcaaacgagacgacggtgatggacctcaacaacgcgctcgaacaggtcaaagagagaatggtcctgtgcagcaacgaagtcgatgatgcagagtccttctgtggctcgtgtgagaagcagcagcagcaagtgctttcagaaaaagtaactcacaaaacgttgggtttggattgtaaaagctgtaatgctagaaggtcgtgcgtgctttttcttccttgcagacacctctgttcgtgcaagttttgtgaagcttttcttgattgctgccccgtgtgtaaatccaccaaggaggcaagcatggaggtctttttggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

272

Amino Acids

31.06

Weight (kDa)

6.11

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	536
AciI	CCGC	5 cut(s)	53, 249, 271, 350, 464
AclI	AACGTT	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	66, 483
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	483
AluBI	AGCT	9 cut(s)	134, 161, 210, 256, 310, 346, 442, 681, 752
AluI	AGCT	9 cut(s)	134, 161, 210, 256, 310, 346, 442, 681, 752
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	3 cut(s)	467, 473, 503
AoxI	GGCC	2 cut(s)	107, 495
ApeKI	GCWGC	6 cut(s)	124, 570, 619, 622, 625, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AsiGI	ACCGGT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	523, 562
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	529
AvaII	GGWCC	2 cut(s)	523, 562
BalI	TGGCCA	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	6 cut(s)	136, 582, 631, 634, 637, 752
BccI	CCATC	2 cut(s)	463, 514
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BclI	TGATCA	2 cut(s)	36, 73
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	467, 473, 503
BfaI	CTAG	2 cut(s)	155, 690
BisI	GCNGC	7 cut(s)	125, 351, 571, 620, 623, 626, 766
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	7 cut(s)	126, 352, 572, 621, 624, 627, 767
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	523, 562
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	523, 562
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	102, 577
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 483
Bse118I	RCCGGY	2 cut(s)	105, 165
Bse3DI	GCAATG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	66, 483
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	152, 266, 302
BseRI	GAGGAG	3 cut(s)	36, 126, 419
BseXI	GCAGC	6 cut(s)	136, 582, 631, 634, 637, 752
BsgI	GTGCAG	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	109, 497
BshTI	ACCGGT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	4 cut(s)	66, 90, 106, 166
BslI	CCNNNNNNNGG	2 cut(s)	66, 483
BsmAI	GTCTC	3 cut(s)	467, 473, 503
BsmBI	CGTCTC	2 cut(s)	473, 503
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	109, 497
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	34, 411
Bsp143I	GATC	2 cut(s)	36, 73
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	5 cut(s)	53, 249, 271, 350, 464
BspANI	GGCC	2 cut(s)	109, 497
BspCNI	CTCAG	3 cut(s)	151, 265, 303
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	2 cut(s)	105, 165
BssAI	RCCGGY	2 cut(s)	105, 165
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	2 cut(s)	36, 73
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	517
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstC8I	GCNNGC	3 cut(s)	348, 704, 796
BstDEI	CTNAG	3 cut(s)	138, 252, 311
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	2 cut(s)	39, 76
BstMAI	GTCTC	3 cut(s)	467, 473, 503
BstMBI	GATC	2 cut(s)	36, 73
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 337, 625, 631
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	136, 582, 631, 634, 637, 752
BsuRI	GGCC	2 cut(s)	109, 497
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	348, 704, 796
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	105, 165
Cfr13I	GGNCC	2 cut(s)	523, 562
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	2 cut(s)	77, 799
DdeI	CTNAG	3 cut(s)	138, 252, 311
DpnI	GATC	2 cut(s)	38, 75
DpnII	GATC	2 cut(s)	36, 73
EaeI	YGGCCR	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	523, 562
Eco57I	CTGAAG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	786
Esp3I	CGTCTC	2 cut(s)	473, 503
FaeI	CATG	2 cut(s)	80, 802
FaiI	YATR	2 cut(s)	78, 800
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FatI	CATG	2 cut(s)	76, 798
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	2 cut(s)	36, 73
Fnu4HI	GCNGC	7 cut(s)	125, 351, 571, 620, 623, 626, 766
FokI	GGATG	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	7 cut(s)	125, 351, 571, 620, 623, 626, 766
FspBI	CTAG	2 cut(s)	155, 690
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	7 cut(s)	125, 351, 571, 620, 623, 626, 766
HaeIII	GGCC	2 cut(s)	109, 497
HapII	CCGG	4 cut(s)	66, 90, 106, 166
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	80, 802
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	3 cut(s)	62, 371, 593
HpaII	CCGG	4 cut(s)	66, 90, 106, 166
HphI	GGTGA	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	36, 61, 640
Hpy188III	TCNNGA	5 cut(s)	77, 155, 236, 446, 758
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	224, 607, 687
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	4 cut(s)	224, 380, 482, 659
HpyCH4V	TGCA	9 cut(s)	204, 265, 285, 298, 325, 570, 590, 720, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 337, 625, 631
HpyF3I	CTNAG	3 cut(s)	138, 252, 311
HpySE526I	ACGT	4 cut(s)	224, 380, 482, 659
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	80, 802
HspAI	GCGC	1 cut(s)	536
Ksp22I	TGATCA	2 cut(s)	36, 73
Kzo9I	GATC	2 cut(s)	36, 73
LmnI	GCTCC	3 cut(s)	139, 406, 439
LpnPI	CCDG	8 cut(s)	8, 79, 103, 119, 179, 332, 530, 578
Lsp1109I	GCAGC	6 cut(s)	136, 582, 631, 634, 637, 752
LweI	GCATC	2 cut(s)	102, 577
MaeI	CTAG	2 cut(s)	155, 690
MaeII	ACGT	4 cut(s)	224, 380, 482, 659
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	2 cut(s)	38, 75
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	2 cut(s)	36, 73
MboII	GAAGA	3 cut(s)	171, 281, 704
MhlI	GDGCHC	2 cut(s)	34, 411
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	2 cut(s)	380, 602
Mox20I	TGGCCA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	4 cut(s)	66, 90, 106, 166
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	285
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	4 cut(s)	262, 337, 625, 631
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	36, 73
NlaIII	CATG	2 cut(s)	80, 802
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	7 cut(s)	126, 352, 572, 621, 624, 627, 767
PleI	GAGTC	2 cut(s)	379, 601
PpsI	GAGTC	2 cut(s)	379, 601
Psp1406I	AACGTT	1 cut(s)	659
PspPI	GGNCC	2 cut(s)	523, 562
PvuII	CAGCTG	1 cut(s)	346
SatI	GCNGC	7 cut(s)	125, 351, 571, 620, 623, 626, 766
Sau3AI	GATC	2 cut(s)	36, 73
Sau96I	GGNCC	2 cut(s)	523, 562
SchI	GAGTC	2 cut(s)	380, 602
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	34, 411
SfaNI	GCATC	2 cut(s)	102, 577
SinI	GGWCC	2 cut(s)	523, 562
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	53, 249, 271, 350, 464
SspMI	CTAG	2 cut(s)	155, 690
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	4 cut(s)	227, 383, 485, 662
TaqI	TCGA	5 cut(s)	258, 369, 374, 540, 582
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	1 cut(s)	193
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	6 cut(s)	124, 570, 619, 622, 625, 765
TspDTI	ATGAA	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	523, 562
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	155, 690
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.