Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

17214186 .. 17216390

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G165800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCATTGAAGCTCAGATGTGTTCAGAAAATCTTGGGTTTCCATTGTGTGGCTCACAGGATTGGATGGTAGACAATGGTTGTGGTGGCGGTGGGTTCAGTCACTTCTGTTTCAATGTTCAACAGAAACACCAACTTCAACAACAACAACAACAGCAACAACAGCAACAACAGCAACAACAACTACAAAACCAGCAGCAGATAAATCAAAATCTCTGCTTTGATACCAGTTTTCTGGTTCCCACTTTGGAAAACAACAATACTTGTAGCAGCATTATGGCCTCCTGTTCTCAAACTATGGAAGCTCAGGCTGCCAAGCAGAGACAAGAGATTGATCAGTACATCAGATTACAGAACGAGAGATTGAGATTGGTACTTCAAGAACAGAGAAAACAGCAGCTTGCAATGCTGTTGAAGAAAATAGAGTCTACAACCCAAGTACTATTAAAGCAAAAGGATGATGAAATAACACAAGCAAACAGGAGAAGAATGGAGCTTGAAGATTTCTTGAGAAAATTGGAGGCTGAAAACCAAGCATGGCAGAGAGTGGCACAAGAAAACGAAGCCATGGTTGTGTCCTTAAACAACACTCTAGAACAGTATAGAGAGAGAGTCTCGTGCTGTCTCATTAATGGGGCAGACGATGCAGAGTCTTGCTGTGATAACAGAGAAGAAGAAGAAGCAGAGAGTGATGGTGTTGATTATGAACAGATAAGGATGAAGATGAAGGTTTGCAAAAGCTGTAATTCTCGGAGTTCGTGTGTCCTGTTCCTTCCTTGCAGACACCTTTGTTCATGCAAAGCTTGTGAGGCGGTTCTTGATTGTTGCCCTGTTTGCAGAACACCAAAGAAGGCCAGCATAGAGGCTTTGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

293

Amino Acids

33.56

Weight (kDa)

5.14

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AccI	GTMKAC	2 cut(s)	72, 428
AciI	CCGC	2 cut(s)	90, 812
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	341, 375, 441
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	7 cut(s)	11, 115, 122, 140, 380, 415, 500
AluBI	AGCT	6 cut(s)	14, 305, 400, 496, 741, 803
AluI	AGCT	6 cut(s)	14, 305, 400, 496, 741, 803
Alw26I	GTCTC	3 cut(s)	316, 619, 629
AoxI	GGCC	3 cut(s)	3, 279, 852
ApeKI	GCWGC	4 cut(s)	196, 270, 311, 397
AseI	ATTAAT	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	616
BbvI	GCAGC	4 cut(s)	208, 282, 298, 409
BccI	CCATC	2 cut(s)	61, 686
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	316, 619, 629
BfaI	CTAG	2 cut(s)	593, 877
BisI	GCNGC	4 cut(s)	197, 271, 312, 398
BlsI	GCNGC	4 cut(s)	198, 272, 313, 399
BmcAI	AGTACT	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	72, 463, 723
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	29, 320
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	4 cut(s)	208, 282, 298, 409
BshFI	GGCC	3 cut(s)	5, 281, 854
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	3 cut(s)	316, 619, 629
BsnI	GGCC	3 cut(s)	5, 281, 854
Bsp143I	GATC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	2 cut(s)	90, 812
BspANI	GGCC	3 cut(s)	5, 281, 854
BspCNI	CTCAG	2 cut(s)	28, 319
BspLI	GGNNCC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	402, 856
BstDEI	CTNAG	2 cut(s)	15, 306
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	72, 463, 723
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	3 cut(s)	316, 619, 629
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 163, 172, 311, 406, 644, 809, 834
BstV1I	GCAGC	4 cut(s)	208, 282, 298, 409
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	5, 281, 854
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	72, 463, 723
Cac8I	GCNNGC	2 cut(s)	402, 856
Csp6I	GTAC	3 cut(s)	340, 374, 440
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	3 cut(s)	537, 568, 795
CviQI	GTAC	3 cut(s)	340, 374, 440
DdeI	CTNAG	2 cut(s)	15, 306
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	540, 571, 798
FaiI	YATR	8 cut(s)	278, 299, 538, 569, 603, 705, 796, 860
FatI	CATG	3 cut(s)	536, 567, 794
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	2 cut(s)	72, 428
Fnu4HI	GCNGC	4 cut(s)	197, 271, 312, 398
FokI	GGATG	3 cut(s)	79, 470, 730
Fsp4HI	GCNGC	4 cut(s)	197, 271, 312, 398
FspBI	CTAG	2 cut(s)	593, 877
GluI	GCNGC	4 cut(s)	197, 271, 312, 398
HaeIII	GGCC	3 cut(s)	5, 281, 854
Hin1II	CATG	3 cut(s)	540, 571, 798
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	3 cut(s)	425, 612, 650
Hpy166II	GTNNAC	2 cut(s)	73, 429
Hpy188I	TCNGA	4 cut(s)	18, 28, 347, 753
Hpy188III	TCNNGA	4 cut(s)	380, 508, 593, 818
Hpy8I	GTNNAC	2 cut(s)	73, 429
HpyAV	CCTTC	3 cut(s)	721, 782, 844
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	404, 647, 735, 780, 798, 837
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 163, 172, 311, 406, 644, 809, 834
HpyF3I	CTNAG	2 cut(s)	15, 306
Hsp92II	CATG	3 cut(s)	540, 571, 798
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	4 cut(s)	208, 282, 298, 409
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	593, 877
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	7 cut(s)	427, 498, 512, 683, 686, 689, 733
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	515, 745
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	434, 621, 659
MnlI	CCTC	4 cut(s)	292, 514, 802, 856
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	446, 581, 630
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	8 cut(s)	11, 163, 172, 311, 406, 644, 809, 834
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	540, 571, 798
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	198, 272, 313, 399
PleI	GAGTC	3 cut(s)	433, 620, 658
PpsI	GAGTC	3 cut(s)	433, 620, 658
PshBI	ATTAAT	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	240
RsaI	GTAC	3 cut(s)	341, 375, 441
RsaNI	GTAC	3 cut(s)	340, 374, 440
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	446, 581, 630
SatI	GCNGC	4 cut(s)	197, 271, 312, 398
Sau3AI	GATC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	441
SchI	GAGTC	3 cut(s)	434, 621, 659
SetI	ASST	8 cut(s)	16, 307, 402, 498, 732, 743, 789, 805
SfaNI	GCATC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	2 cut(s)	515, 745
SsiI	CCGC	2 cut(s)	90, 812
SspMI	CTAG	2 cut(s)	593, 877
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	600
TasI	AATT	2 cut(s)	515, 745
TatI	WGTACW	2 cut(s)	339, 439
Tru1I	TTAA	3 cut(s)	446, 581, 630
Tru9I	TTAA	3 cut(s)	446, 581, 630
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	196, 270, 311, 397
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	477, 720, 734, 740, 783
Van91I	CCANNNNNTGG	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	630
XbaI	TCTAGA	1 cut(s)	592
XmiI	GTMKAC	2 cut(s)	72, 428
XspI	CTAG	2 cut(s)	593, 877
ZrmI	AGTACT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.