Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Reverse (-)

428603 .. 429577

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000110.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggctattgaagcacagttgtattcagagaatcttgggtttccgatgtttggctcacaatcgcagaatttgatggtggacaacaatggttgtggtggttctggcggtgggtttaatcagttctgttttaatgtccagcagaaaccgccgcagctactacaataccagccaccaccgatgaatcccggtgtgcttgttccggctttgcacaacaacaacatcatggcttatactcgacagagtattgcagctcaggaagccaagcaaagacaagagattgatgactatctcagattacagaatgagagattgagattggtgctacaagagcagagaaatcagcaacttgcattgttgatgaagaaaatcgagtccagaacagagctactattgaagcaaaaggatgaagaaatagcacaagcggtgaagaagagaatggagctcgaagatttcttgaggaaattggaggctgaaaaccaagcgtggcaaagagtggctcaggagaatgaagccatcgttgtgtccttaaacaacactcttgaacagttcagagagagagccgcttgtggtgccatggaagatgcagagtcttgctgtgatagtaaacaagatgaggaagaagaagacacaggggattacagaggaggctttaataatggcgtgaacgaagagataaagatgatggtttgcaaaggctgcaattctaaaaggtcgtgtgtcttgttcctcccctgcaggcatctttgttcatgcaaagcctgtgaggctggctttgattcttgtcctgtttgcacaacgccaaagaaggccagcatagaggcattgattttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

277

Amino Acids

31.28

Weight (kDa)

5.08

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	5 cut(s)	105, 146, 149, 422, 561
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	11, 394, 542
AluBI	AGCT	4 cut(s)	154, 251, 385, 442
AluI	AGCT	4 cut(s)	154, 251, 385, 442
Alw21I	GWGCWC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	807
ApeKI	GCWGC	3 cut(s)	151, 248, 696
ApoI	RAATTY	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	163, 260, 683
BccI	CCATC	3 cut(s)	67, 521, 676
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	832
BfmI	CTRYAG	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
BlsI	GCNGC	5 cut(s)	150, 153, 250, 562, 698
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	571, 748
BpiI	GAAGAC	1 cut(s)	630
Bpu10I	CCTNAGC	2 cut(s)	252, 498
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	266, 304, 512
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	3 cut(s)	163, 260, 683
BshFI	GGCC	1 cut(s)	809
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	186, 200
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	5 cut(s)	105, 146, 149, 422, 561
BspANI	GGCC	1 cut(s)	809
BspCNI	CTCAG	3 cut(s)	265, 303, 511
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	18, 546
Bst6I	CTCTTC	2 cut(s)	425, 663
BstAPI	GCANNNNNTGC	1 cut(s)	696
BstC8I	GCNNGC	3 cut(s)	737, 769, 811
BstDEI	CTNAG	3 cut(s)	252, 290, 498
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	163, 260, 683
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	809
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	737, 769, 811
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	223, 574, 750
DdeI	CTNAG	3 cut(s)	252, 290, 498
Eam1104I	CTCTTC	2 cut(s)	425, 663
EarI	CTCTTC	2 cut(s)	425, 663
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	226, 577, 753
FaiI	YATR	5 cut(s)	224, 231, 575, 751, 815
FatI	CATG	3 cut(s)	222, 573, 749
Fnu4HI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
FspBI	CTAG	1 cut(s)	832
GluI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
HaeIII	GGCC	1 cut(s)	809
HapII	CCGG	2 cut(s)	186, 200
Hin1II	CATG	3 cut(s)	226, 577, 753
HinfI	GANTC	5 cut(s)	31, 181, 371, 587, 776
HpaII	CCGG	2 cut(s)	186, 200
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	79, 605, 664
Hpy188I	TCNGA	4 cut(s)	28, 45, 293, 551
Hpy188III	TCNNGA	5 cut(s)	254, 375, 454, 500, 539
Hpy8I	GTNNAC	3 cut(s)	79, 605, 664
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	2 cut(s)	18, 546
HpyCH4V	TGCA	9 cut(s)	208, 248, 350, 584, 690, 699, 735, 753, 792
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
HpyF3I	CTNAG	3 cut(s)	252, 290, 498
Hsp92II	CATG	3 cut(s)	226, 577, 753
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	3 cut(s)	163, 260, 683
LweI	GCATC	2 cut(s)	571, 748
MaeI	CTAG	1 cut(s)	832
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	3 cut(s)	67, 461, 700
MlyI	GAGTC	2 cut(s)	380, 596
MnlI	CCTC	8 cut(s)	450, 460, 607, 635, 638, 737, 757, 811
MseI	TTAA	4 cut(s)	114, 129, 527, 651
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	2 cut(s)	186, 200
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	7 cut(s)	11, 145, 257, 328, 569, 696, 764
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	573
NlaIII	CATG	3 cut(s)	226, 577, 753
NlaIV	GGNNCC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	31, 181, 776
PkrI	GCNGC	5 cut(s)	150, 153, 250, 562, 698
PleI	GAGTC	2 cut(s)	379, 595
PpsI	GAGTC	2 cut(s)	379, 595
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	737
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	114, 129, 527, 651
SatI	GCNGC	5 cut(s)	149, 152, 249, 561, 697
SbfI	CCTGCAGG	1 cut(s)	737
SchI	GAGTC	2 cut(s)	380, 596
ScrFI	CCNGG	1 cut(s)	186
SdaI	CCTGCAGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	5 cut(s)	156, 253, 387, 444, 713
SfaNI	GCATC	2 cut(s)	571, 748
SfcI	CTRYAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse8387I	CCTGCAGG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	67, 461, 700
SsiI	CCGC	5 cut(s)	105, 146, 149, 422, 561
SspMI	CTAG	1 cut(s)	832
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	18, 546
TaqI	TCGA	3 cut(s)	235, 369, 444
TasI	AATT	3 cut(s)	67, 461, 700
TauI	GCSGC	2 cut(s)	151, 563
TfiI	GAWTC	3 cut(s)	31, 181, 776
Tru1I	TTAA	4 cut(s)	114, 129, 527, 651
Tru9I	TTAA	4 cut(s)	114, 129, 527, 651
TseI	GCWGC	3 cut(s)	151, 248, 696
TspDTI	ATGAA	5 cut(s)	194, 374, 420, 522, 738
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.