Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

19616134 .. 19621886

Gene Structure 5753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGACAACGAAGAGGCCGAGAATGTTAATGTGGAGAGGTCCAACGGATATGTGAAGCTTCTGCTACCAACGCCGCCGCTCGGGCTCGGAGTTCTTACTGTTACCTTTCTCAGAACAGGGAGTCCTATATTGTTTCTCTGTGATCAAATAATCACAATCAACCACCCTCTGTGGACTAAGTCAACGCCCTCATCATCCAATTGCATACAACGATACAAAACACACCAGAACACAAATGAAGACCACTTTTGGGGATTGCTGGCGTATCGCAATTGGGGTCGATACCCATTTTCTAGTTGCTCTGCCATTTGCGAGGCCGATCTGCAAGGAATTAAAGGATCTGGTACAGACGGATTGCTTGAAGTCGGAGAGCTCGAGCTTCTTCGCTATTTCCAAGAGATCGACGTGGATGGATGCCGTAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

143

Amino Acids

15.99

Weight (kDa)

5.11

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	2 cut(s)	74, 77
AclWI	GGATC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	80, 250
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	3 cut(s)	58, 373, 379
AluI	AGCT	3 cut(s)	58, 373, 379
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	2 cut(s)	80, 374
AoxI	GGCC	2 cut(s)	15, 315
AspS9I	GGNCC	1 cut(s)	39
AvaI	CYCGRG	2 cut(s)	80, 374
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	87, 375
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	402
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	74, 77
BlsI	GCNGC	2 cut(s)	75, 78
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	2 cut(s)	80, 374
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 250
BseGI	GGATG	3 cut(s)	194, 415, 419
BseLI	CCNNNNNNNGG	2 cut(s)	80, 250
BseMII	CTCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	17, 317
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	80, 374
BslI	CCNNNNNNNGG	2 cut(s)	80, 250
BsnI	GGCC	2 cut(s)	17, 317
BsoBI	CYCGRG	2 cut(s)	80, 374
Bsp1286I	GDGCHC	2 cut(s)	87, 375
Bsp143I	GATC	4 cut(s)	142, 319, 338, 399
BspACI	CCGC	2 cut(s)	74, 77
BspANI	GGCC	2 cut(s)	17, 317
BspCNI	CTCAG	1 cut(s)	123
BspPI	GGATC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	79
BssMI	GATC	4 cut(s)	142, 319, 338, 399
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	110, 177
BstF5I	GGATG	3 cut(s)	194, 415, 419
BstKTI	GATC	4 cut(s)	145, 322, 341, 402
BstMBI	GATC	4 cut(s)	142, 319, 338, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 82
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	17, 317
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	194, 415, 419
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	345
CviJI	RGCY	6 cut(s)	17, 58, 85, 317, 373, 379
CviKI_1	RGCY	6 cut(s)	17, 58, 85, 317, 373, 379
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	110, 177
DpnI	GATC	4 cut(s)	144, 321, 340, 401
DpnII	GATC	4 cut(s)	142, 319, 338, 399
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	87, 375
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	80, 374
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	87, 375
FaiI	YATR	3 cut(s)	51, 128, 206
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	74, 77
FokI	GGATG	2 cut(s)	181, 422
FriOI	GRGCYC	2 cut(s)	87, 375
Fsp4HI	GCNGC	2 cut(s)	74, 77
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	74, 77
HaeIII	GGCC	2 cut(s)	17, 317
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	174, 183
Hpy188I	TCNGA	3 cut(s)	89, 113, 368
Hpy8I	GTNNAC	2 cut(s)	174, 183
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	204, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 82
HpyF3I	CTNAG	2 cut(s)	110, 177
HpySE526I	ACGT	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	142, 319, 338, 399
LpnPI	CCDG	4 cut(s)	102, 239, 245, 327
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	144, 321, 340, 401
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	4 cut(s)	142, 319, 338, 399
MboII	GAAGA	3 cut(s)	23, 251, 374
MfeI	CAATTG	2 cut(s)	199, 271
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	87, 375
MluCI	AATT	3 cut(s)	199, 271, 330
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	66, 346
MnlI	CCTC	5 cut(s)	7, 30, 177, 199, 307
MseI	TTAA	2 cut(s)	27, 333
MunI	CAATTG	2 cut(s)	199, 271
MwoI	GCNNNNNNNGC	2 cut(s)	70, 82
NdeII	GATC	4 cut(s)	142, 319, 338, 399
NmeAIII	GCCGAG	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 372
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	75, 78
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	178
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	27, 333
SatI	GCNGC	2 cut(s)	74, 77
Sau3AI	GATC	4 cut(s)	142, 319, 338, 399
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	87, 375
SetI	ASST	6 cut(s)	41, 60, 107, 375, 381, 408
SfaNI	GCATC	1 cut(s)	404
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	199, 271, 330
SsiI	CCGC	2 cut(s)	74, 77
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	280, 375, 402
TasI	AATT	3 cut(s)	199, 271, 330
TauI	GCSGC	2 cut(s)	76, 79
Tru1I	TTAA	2 cut(s)	27, 333
Tru9I	TTAA	2 cut(s)	27, 333
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	2 cut(s)	60, 366
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.