Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

22761735 .. 22763894

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGTTCAAGCTCAGACCATGTATTTCTCGGAAAACTTGGGCATGAGTGGCTTCCCGCAGCAACAAGATTGGTCTTTGATCAACCCACCTCCTCTTTCTGATTCCGGGTTTGATCATGACTTTTTCTCCGGCCTCATTCCAAACCCTCAAACTCATCAGCAGCAACAAGTTCATCAGTTTCATCCAAATCTAGGAGTTTCTTCTGTTTCAAATTCTCCTAATTCCACTTGCAATAGCTTCCTCCCCACGACGTCGTTTTCCGATACTCTCACCGCTCAGCTCGACTTGCAAAGGCCGGAGATAGATTTGCTTTGCAAGAGCAGAGGAAAGGTAGGGAAGTCGGAAGCTCGCGCTTCTAGATCGGAAGCTCACGCTTCCAGCATGCTCCCAATTCTACTTTTTTCGGAAGCGCGCTTCCAGCCGCTTCGGGGCGCTTCCTTGAAGCTTCCGCTTCGCTTCCGGTTCCGAAGCGGGAATCGTAGGTCTCCCGGCGCTTCCGTGCTACAATGGACAAACCCAGACCATCTTCTCCAAAGAAAAAGAAGAACAAAACCAGAATCCACAATCGGGCAAGATTTGAGGTGGATATTCGCTGATCAAAAATCAAAACACCCACTCGACGGCGAGGCCTATTTGCAAGGAATTAAAGGATCTGGTACGGATGAATTGCTTCAAGTCGGAGAGCTCGAGCTTCTTCACTATTTCCAAGAGATCGACGTGGATGGATGCCGTAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

248

Amino Acids

27.73

Weight (kDa)

7.81

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	2 cut(s)	354, 415
AciI	CCGC	5 cut(s)	59, 276, 425, 452, 474
AclWI	GGATC	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	4 cut(s)	194, 431, 570, 623
AgsI	TTSAA	4 cut(s)	11, 213, 445, 677
AjiI	CACGTC	1 cut(s)	721
AluBI	AGCT	8 cut(s)	14, 240, 283, 350, 371, 448, 688, 694
AluI	AGCT	8 cut(s)	14, 240, 283, 350, 371, 448, 688, 694
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	3 cut(s)	133, 296, 630
ApeKI	GCWGC	2 cut(s)	61, 163
ApoI	RAATTY	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	5 cut(s)	356, 415, 417, 437, 497
AsuC2I	CCSGG	2 cut(s)	109, 492
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	2 cut(s)	73, 175
BccI	CCATC	2 cut(s)	534, 719
BceAI	ACGGC	2 cut(s)	640, 717
BclI	TGATCA	3 cut(s)	81, 115, 598
BcnI	CCSGG	2 cut(s)	109, 492
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	194, 360
BfoI	RGCGCY	2 cut(s)	438, 498
BisI	GCNGC	3 cut(s)	62, 164, 425
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	3 cut(s)	63, 165, 426
Bme1390I	CCNGG	2 cut(s)	109, 492
BmeT110I	CYCGRG	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	721
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	109, 492
BmsI	GCATC	1 cut(s)	719
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	109, 492
BsaHI	GRCGYC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 431, 570, 623
BseGI	GGATG	4 cut(s)	184, 670, 730, 734
BseLI	CCNNNNNNNGG	4 cut(s)	194, 431, 570, 623
BseMII	CTCAG	2 cut(s)	29, 293
BsePI	GCGCGC	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	73, 175
Bsh1236I	CGCG	2 cut(s)	354, 415
BshFI	GGCC	3 cut(s)	135, 298, 632
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	5 cut(s)	108, 132, 299, 463, 492
BslI	CCNNNNNNNGG	4 cut(s)	194, 431, 570, 623
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	135, 298, 632
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	5 cut(s)	59, 276, 425, 452, 474
BspANI	GGCC	3 cut(s)	135, 298, 632
BspCNI	CTCAG	2 cut(s)	28, 292
BspFNI	CGCG	2 cut(s)	354, 415
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	278
BssHII	GCGCGC	1 cut(s)	413
BssMI	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
BssNI	GRCGYC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	352, 386, 415
BstDEI	CTNAG	2 cut(s)	15, 279
BstF5I	GGATG	4 cut(s)	184, 670, 730, 734
BstFNI	CGCG	2 cut(s)	354, 415
BstH2I	RGCGCY	2 cut(s)	438, 498
BstHHI	GCGC	5 cut(s)	356, 415, 417, 437, 497
BstKTI	GATC	6 cut(s)	84, 118, 365, 601, 656, 717
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 51, 289, 421
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	107, 490
BstUI	CGCG	2 cut(s)	354, 415
BstV1I	GCAGC	2 cut(s)	73, 175
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	135, 298, 632
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	4 cut(s)	184, 670, 730, 734
Cac8I	GCNNGC	3 cut(s)	352, 386, 415
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	5 cut(s)	356, 415, 417, 437, 497
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	4 cut(s)	22, 46, 119, 385
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	2 cut(s)	15, 279
DpnI	GATC	6 cut(s)	83, 117, 364, 600, 655, 716
DpnII	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
Ecl136II	GAGCTC	1 cut(s)	688
Eco147I	AGGCCT	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	690
FaeI	CATG	4 cut(s)	25, 49, 122, 388
FaiI	YATR	4 cut(s)	23, 47, 120, 386
FatI	CATG	4 cut(s)	21, 45, 118, 384
FauI	CCCGC	2 cut(s)	66, 467
FbaI	TGATCA	3 cut(s)	81, 115, 598
Fnu4HI	GCNGC	3 cut(s)	62, 164, 425
FokI	GGATG	3 cut(s)	171, 677, 737
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	3 cut(s)	62, 164, 425
FspBI	CTAG	2 cut(s)	194, 360
GlaI	GCGC	5 cut(s)	355, 414, 416, 436, 496
GluI	GCNGC	3 cut(s)	62, 164, 425
HaeII	RGCGCY	2 cut(s)	438, 498
HaeIII	GGCC	3 cut(s)	135, 298, 632
HapII	CCGG	5 cut(s)	108, 132, 299, 463, 492
HhaI	GCGC	5 cut(s)	356, 415, 417, 437, 497
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	25, 49, 122, 388
Hin6I	GCGC	5 cut(s)	354, 413, 415, 435, 495
HinP1I	GCGC	5 cut(s)	354, 413, 415, 435, 495
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	104, 478, 560
HpaII	CCGG	5 cut(s)	108, 132, 299, 463, 492
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	9 cut(s)	18, 34, 103, 265, 346, 367, 409, 470, 683
Hpy188III	TCNNGA	2 cut(s)	119, 360
Hpy99I	CGWCG	4 cut(s)	256, 259, 626, 722
HpyCH4IV	ACGT	2 cut(s)	254, 720
HpyCH4V	TGCA	4 cut(s)	234, 292, 318, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 51, 289, 421
HpyF3I	CTNAG	2 cut(s)	15, 279
HpySE526I	ACGT	2 cut(s)	254, 720
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	25, 49, 122, 388
HspAI	GCGC	5 cut(s)	354, 413, 415, 435, 495
Ksp22I	TGATCA	3 cut(s)	81, 115, 598
Kzo9I	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	2 cut(s)	73, 175
LweI	GCATC	1 cut(s)	719
MaeI	CTAG	2 cut(s)	194, 360
MaeII	ACGT	2 cut(s)	254, 720
MalI	GATC	6 cut(s)	83, 117, 364, 600, 655, 716
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
MboII	GAAGA	4 cut(s)	195, 521, 558, 689
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	5 cut(s)	214, 223, 393, 645, 668
MmeI	TCCRAC	2 cut(s)	324, 661
MnlI	CCTC	8 cut(s)	102, 105, 146, 159, 254, 320, 576, 622
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	1 cut(s)	648
MspI	CCGG	5 cut(s)	108, 132, 299, 463, 492
MspR9I	CCNGG	2 cut(s)	109, 492
MvnI	CGCG	2 cut(s)	354, 415
MwoI	GCNNNNNNNGC	4 cut(s)	11, 51, 289, 421
NciI	CCSGG	2 cut(s)	109, 492
NdeII	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
NlaIII	CATG	4 cut(s)	25, 49, 122, 388
NlaIV	GGNNCC	1 cut(s)	467
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	689
PagI	TCATGA	1 cut(s)	118
PauI	GCGCGC	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	104, 478, 560
PkrI	GCNGC	3 cut(s)	63, 165, 426
Psp124BI	GAGCTC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	467
PspXI	VCTCGAGB	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	653
PteI	GCGCGC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	690
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	3 cut(s)	62, 164, 425
Sau3AI	GATC	6 cut(s)	81, 115, 362, 598, 653, 714
ScrFI	CCNGG	2 cut(s)	109, 492
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	719
Sfr274I	CTCGAG	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	5 cut(s)	214, 223, 393, 645, 668
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	5 cut(s)	59, 276, 425, 452, 474
SspMI	CTAG	2 cut(s)	194, 360
SstI	GAGCTC	1 cut(s)	690
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	107, 490
TaiI	ACGT	2 cut(s)	257, 723
TaqI	TCGA	4 cut(s)	285, 621, 690, 717
TasI	AATT	5 cut(s)	214, 223, 393, 645, 668
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	3 cut(s)	104, 478, 560
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TseI	GCWGC	2 cut(s)	61, 163
TspDTI	ATGAA	3 cut(s)	164, 173, 681
TspGWI	ACGGA	2 cut(s)	490, 677
XapI	RAATTY	1 cut(s)	214
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	194, 360
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.