Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Forward (+)

20385752 .. 20387531

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1124700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCATCGAAGCTCAGATGTATCCGGAGAATCTTGGGTTTCCATTGTTTGGCTCACAGGATTGGATGGTGGAAAATTGTGGTGGTGGTGTCGGTGGGTTCAGTCAGTTTAGTTTAAATGCTCAACAGAAACACCAACTGCAACAACAATCTCAGCAGCAACAACAGCTTCTACACAACCAGCAGCAGATAATGGATCAAAATCTCTGCTTTGAAAACAGTTTTCTTGTCCCCACTTTGGAAAACAACAGCAGCAACATTATGGCCTCCTCCTTTTCTCAAACATTGGAAGCTCAGGTTGCCAAGCAGAGGCAAGAGATTGATCAGTACATCAAATTACAGAATGAAAGATTGAGATTGGTGCTGCAAGAGCAGAGAAAGCAGCAACTCGCAATGCTGCTGAAGAAAATAGACTCCAAAACACAAGCGCTTTTAAAGCAGAAAGACGAAGGAATCACACAAGCAAACAGAAGACGAATGGAGCTCGAAGATTTTCTCAGAAAATTGGAGGCAGAAAACCAGGCATGGAAAAGAGTAGCACAGGAAAACGAAGCCATGGTCGTGTCATTAAACAACACACTGGAACAGTTCAGGGAGAGGGCCACGTGTTGCCCCTTGAATGGTGCAGAGGATGCAGAGTCCTGCTGTGACAACTACAGAGAAGGAGAGGGTGATGATGGAGTAGGAGGTGAAAAGATGAAGGCTTGCAGAAGATGTAATTCTAGGAGTTCGTGTGTGCTGTTTCTTCCCTGCAGGCACCTCTGTTCATGCAAAGATTGCGAGGCCATTCTGGATTATTGCCCGGTTTGTAGAACGCCAAAGAAGGCCAGCATTGAGGCTTTGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

284

Amino Acids

32.32

Weight (kDa)

5.61

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	234 - 275	6.6e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	25
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	422
AcvI	CACGTG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	4 cut(s)	50, 238, 309, 620
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	215, 619
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	4 cut(s)	14, 169, 293, 484
AluI	AGCT	4 cut(s)	14, 169, 293, 484
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	5 cut(s)	3, 264, 600, 783, 825
ApeKI	GCWGC	6 cut(s)	157, 184, 252, 364, 382, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	2 cut(s)	683, 701
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	6 cut(s)	169, 196, 264, 351, 384, 394
BccI	CCATC	3 cut(s)	14, 61, 671
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	803
BfaI	CTAG	2 cut(s)	723, 850
BfmI	CTRYAG	2 cut(s)	655, 751
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	6 cut(s)	158, 185, 253, 365, 383, 398
BlsI	GCNGC	6 cut(s)	159, 186, 254, 366, 384, 399
Bme1390I	CCNGG	2 cut(s)	521, 803
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	2 cut(s)	521, 803
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	478
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	803
BsaAI	YACGTR	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 238, 309, 620
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	2 cut(s)	72, 637
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	4 cut(s)	50, 238, 309, 620
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	4 cut(s)	29, 167, 308, 511
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	6 cut(s)	169, 196, 264, 351, 384, 394
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	5 cut(s)	5, 266, 602, 785, 827
BshNI	GGYRCC	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	26, 803
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	4 cut(s)	50, 238, 309, 620
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	5 cut(s)	5, 266, 602, 785, 827
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	196, 322
Bsp19I	CCATGG	1 cut(s)	555
BspANI	GGCC	5 cut(s)	5, 266, 602, 785, 827
BspCNI	CTCAG	4 cut(s)	28, 166, 307, 510
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	758
BspMAI	CTGCAG	1 cut(s)	755
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	2 cut(s)	196, 322
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	221, 588
BstAPI	GCANNNNNTGC	2 cut(s)	632, 777
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	3 cut(s)	706, 755, 829
BstDEI	CTNAG	4 cut(s)	15, 153, 294, 497
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	72, 637
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	199, 325
BstMBI	GATC	2 cut(s)	196, 322
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 166, 299, 370, 379, 436, 632, 777
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	519, 801
BstSFI	CTRYAG	2 cut(s)	655, 751
BstV1I	GCAGC	6 cut(s)	169, 196, 264, 351, 384, 394
BstV2I	GAAGAC	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	5 cut(s)	5, 266, 602, 785, 827
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	72, 637
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	706, 755, 829
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	3 cut(s)	525, 556, 768
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	15, 153, 294, 497
DpnI	GATC	2 cut(s)	198, 324
DpnII	GATC	2 cut(s)	196, 322
DraI	TTTAAA	2 cut(s)	117, 435
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	486
Eco47III	AGCGCT	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	422
Eco72I	CACGTG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	528, 559, 771
FaiI	YATR	4 cut(s)	263, 526, 557, 769
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	524, 555, 767
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	158, 185, 253, 365, 383, 398
FokI	GGATG	2 cut(s)	79, 644
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	6 cut(s)	158, 185, 253, 365, 383, 398
FspBI	CTAG	2 cut(s)	723, 850
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	6 cut(s)	158, 185, 253, 365, 383, 398
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	5, 266, 602, 785, 827
HapII	CCGG	2 cut(s)	26, 803
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	528, 559, 771
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	31, 413, 453, 638
HpaII	CCGG	2 cut(s)	26, 803
HphI	GGTGA	2 cut(s)	683, 701
Hpy188I	TCNGA	2 cut(s)	18, 500
Hpy188III	TCNNGA	2 cut(s)	26, 791
HpyAV	CCTTC	4 cut(s)	443, 656, 694, 817
HpyCH4III	ACNGT	2 cut(s)	221, 588
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	7 cut(s)	142, 367, 626, 635, 708, 753, 771
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 166, 299, 370, 379, 436, 632, 777
HpyF3I	CTNAG	4 cut(s)	15, 153, 294, 497
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	528, 559, 771
HspAI	GCGC	1 cut(s)	428
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	196, 322
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	6 cut(s)	169, 196, 264, 351, 384, 394
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	723, 850
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	2 cut(s)	198, 324
MboI	GATC	2 cut(s)	196, 322
MboII	GAAGA	5 cut(s)	415, 483, 500, 723, 737
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	76, 335, 503, 718
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	407, 647
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	116, 434, 569
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	26, 803
MspR9I	CCNGG	2 cut(s)	521, 803
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	8 cut(s)	11, 166, 299, 370, 379, 436, 632, 777
NciI	CCSGG	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	2 cut(s)	196, 322
NlaIII	CATG	3 cut(s)	528, 559, 771
NlaIV	GGNNCC	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	31, 453
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	159, 186, 254, 366, 384, 399
PleI	GAGTC	2 cut(s)	407, 646
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
PpsI	GAGTC	2 cut(s)	407, 646
Ppu21I	YACGTR	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	519
PspCI	CACGTG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	758
PspPI	GGNCC	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	116, 434, 569
SatI	GCNGC	6 cut(s)	158, 185, 253, 365, 383, 398
Sau3AI	GATC	2 cut(s)	196, 322
Sau96I	GGNCC	1 cut(s)	600
SbfI	CCTGCAGG	1 cut(s)	755
SchI	GAGTC	2 cut(s)	407, 647
ScrFI	CCNGG	2 cut(s)	521, 803
SdaI	CCTGCAGG	1 cut(s)	755
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	8 cut(s)	16, 171, 295, 300, 486, 608, 691, 762
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	2 cut(s)	655, 751
SmiMI	CAYNNNNRTG	1 cut(s)	560
Sse8387I	CCTGCAGG	1 cut(s)	755
Sse9I	AATT	4 cut(s)	76, 335, 503, 718
SspMI	CTAG	2 cut(s)	723, 850
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	519, 801
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	221, 588
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	2 cut(s)	9, 486
TasI	AATT	4 cut(s)	76, 335, 503, 718
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	31, 453
Tru1I	TTAA	3 cut(s)	116, 434, 569
Tru9I	TTAA	3 cut(s)	116, 434, 569
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	6 cut(s)	157, 184, 252, 364, 382, 397
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	360, 713, 756
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	723, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.