Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Reverse (-)

33334702 .. 33338596

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G362300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAGTTCAGGCACCACAGTTGTATTCTTCTGAAAACTTGGGCTTACCCACAACCATGACCACCATGTCTACTGGCCTTCAACAAGATTGGTCGATGCAGCTCAACCCTGTTTCTGGCCTTGACGACATTTTTTCCAGCTTTCCGAGCCCTCAGCCTCTTCATGATCATTTTCATCTTCGTCAAGCCCCTCAAAGTCAGAATACAATAGACATTGATTGTTGTAACCAATTGGGAGTTTCAGTTGCCCCGTCCACTTTTAATTGCTTTCTACCAACACCGTTTTCTGAAGCTTTGGGTGCTCAGCTTGACTTGCAAAGGCACGAGCTTGACTGCATTCTTCAATTGCAGAATGAGAAGCTAAGGTTTGCTTTGCAAGAGCAGAGGAAGCAACAACTGGCAGCCCTCTTGAGGAACTTAGAATCTAGAACCTTGAGTTTGATTAGGCAAAAAGAAGAGCACTTAGCACAAGCGACAAAGAGGGCCATAGAGCTCCAAGATTGCTTGAGGAAAGCAGAGATGGAAAGCGAGACATGGCAGAGGATGGCCAAAGCAAATGAGACCATGGTCATAGACCTCAACAACACGCTTGAACAGGTCAGAGAGAGACTGGTTTTTGTCAGTAACGAAGCTGAAGACGCAGAGTCCTGCTGTGGCTCGTGTGACAGAGGAGGACACAGAGACAACGACAGGGTAGCAATGCTGCAAGAACATCGAGTGGTTGAAGAAAAAGGGAAAAAGTTGGCTTGCAAAAACTGTAACACTAGGAGGTCGTGCGTTCTTTTTCTACCTTGCAGACACCTCTGTTCGTGTAAGTCCTGTGAACCCTTTCTTGGTTCTTGCCCGGTTTGTGAATCCACCAAGGAGGCAAGCATGGAGGTCTTTTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

298

Amino Acids

33.55

Weight (kDa)

5.56

Isoelectric Point (pI)

67.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	546
AcuI	CTGAAG	2 cut(s)	309, 654
AfiI	CCNNNNNNNGG	3 cut(s)	116, 411, 833
AgsI	TTSAA	4 cut(s)	83, 344, 593, 725
AhdI	GACNNNNNGTC	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	4 cut(s)	268, 300, 816, 848
AluBI	AGCT	8 cut(s)	103, 141, 293, 307, 328, 361, 493, 632
AluI	AGCT	8 cut(s)	103, 141, 293, 307, 328, 361, 493, 632
Alw21I	GWGCWC	3 cut(s)	304, 462, 495
Alw26I	GTCTC	4 cut(s)	524, 554, 601, 675
AoxI	GGCC	4 cut(s)	76, 118, 483, 546
ApeKI	GCWGC	3 cut(s)	100, 401, 703
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	845
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	152, 495
BauI	CACGAG	2 cut(s)	323, 658
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	3 cut(s)	304, 462, 495
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	112, 413, 690
BccI	CCATC	2 cut(s)	514, 538
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	4 cut(s)	524, 554, 601, 675
BfaI	CTAG	2 cut(s)	426, 765
BisI	GCNGC	3 cut(s)	101, 402, 704
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	102, 403, 705
Bme1390I	CCNGG	1 cut(s)	845
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	642
Bpu10I	CCTNAGC	2 cut(s)	153, 362
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	3 cut(s)	430, 454, 526
BpuMI	CCSGG	1 cut(s)	845
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	564, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 411, 833
Bse1I	ACTGG	3 cut(s)	79, 402, 615
Bse3DI	GCAATG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	564, 861
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	116, 411, 833
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	167, 317
BseNI	ACTGG	3 cut(s)	79, 402, 615
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	112, 413, 690
BshFI	GGCC	4 cut(s)	78, 120, 485, 548
BshNI	GGYRCC	1 cut(s)	13
BsiHKAI	GWGCWC	3 cut(s)	304, 462, 495
BsiSI	CCGG	1 cut(s)	845
BslI	CCNNNNNNNGG	3 cut(s)	116, 411, 833
BsmAI	GTCTC	4 cut(s)	524, 554, 601, 675
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	78, 120, 485, 548
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	4 cut(s)	152, 304, 462, 495
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	564
BspANI	GGCC	4 cut(s)	78, 120, 485, 548
BspCNI	CTCAG	2 cut(s)	166, 316
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	3 cut(s)	79, 402, 615
BssECI	CCNNGG	2 cut(s)	564, 861
BssMI	GATC	1 cut(s)	166
BssSI	CACGAG	2 cut(s)	323, 658
BssT1I	CCWWGG	2 cut(s)	564, 861
Bst2BI	CACGAG	2 cut(s)	323, 658
Bst4CI	ACNGT	3 cut(s)	21, 282, 758
Bst6I	CTCTTC	2 cut(s)	165, 450
BstC8I	GCNNGC	2 cut(s)	748, 871
BstDEI	CTNAG	5 cut(s)	153, 303, 362, 418, 463
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	1 cut(s)	549
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	4 cut(s)	524, 554, 601, 675
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 147, 299, 313, 388, 638
BstPAI	GACNNNNGTC	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	112, 413, 690
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	78, 120, 485, 548
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	549
Cac8I	GCNNGC	2 cut(s)	748, 871
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	483
CseI	GACGC	1 cut(s)	647
CviAII	CATG	6 cut(s)	58, 67, 164, 534, 565, 874
DdeI	CTNAG	5 cut(s)	153, 303, 362, 418, 463
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	67
DriI	GACNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	165, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	2 cut(s)	165, 450
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	564, 861
Eco24I	GRGCYC	2 cut(s)	152, 495
Eco31I	GGTCTC	1 cut(s)	554
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	309, 654
EcoICRI	GAGCTC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	564, 861
EcoT38I	GRGCYC	2 cut(s)	152, 495
ErhI	CCWWGG	2 cut(s)	564, 861
FaeI	CATG	6 cut(s)	61, 70, 167, 537, 568, 877
FaiI	YATR	8 cut(s)	59, 68, 165, 488, 535, 566, 572, 875
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FatI	CATG	6 cut(s)	57, 66, 163, 533, 564, 873
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	101, 402, 704
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	2 cut(s)	152, 495
Fsp4HI	GCNGC	3 cut(s)	101, 402, 704
FspBI	CTAG	2 cut(s)	426, 765
GluI	GCNGC	3 cut(s)	101, 402, 704
HaeIII	GGCC	4 cut(s)	78, 120, 485, 548
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	6 cut(s)	61, 70, 167, 537, 568, 877
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	422, 644, 854
HpaII	CCGG	1 cut(s)	845
Hpy166II	GTNNAC	3 cut(s)	72, 255, 824
Hpy188I	TCNGA	5 cut(s)	34, 147, 201, 289, 602
Hpy188III	TCNNGA	3 cut(s)	164, 409, 426
Hpy8I	GTNNAC	3 cut(s)	72, 255, 824
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	3 cut(s)	21, 282, 758
HpyCH4V	TGCA	8 cut(s)	100, 316, 336, 349, 376, 706, 750, 795
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 147, 299, 313, 388, 638
HpyF3I	CTNAG	5 cut(s)	153, 303, 362, 418, 463
Hsp92II	CATG	6 cut(s)	61, 70, 167, 537, 568, 877
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	498
Lsp1109I	GCAGC	3 cut(s)	112, 413, 690
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	426, 765
MaeIII	GTNAC	4 cut(s)	224, 623, 662, 758
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	7 cut(s)	21, 152, 170, 332, 467, 647, 737
MfeI	CAATTG	2 cut(s)	230, 344
MhlI	GDGCHC	4 cut(s)	152, 304, 462, 495
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	3 cut(s)	230, 262, 344
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	653
Mox20I	TGGCCA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	1 cut(s)	845
MunI	CAATTG	2 cut(s)	230, 344
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	6 cut(s)	11, 147, 299, 313, 388, 638
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	6 cut(s)	61, 70, 167, 537, 568, 877
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	422, 854
PkrI	GCNGC	3 cut(s)	102, 403, 705
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PshAI	GACNNNNGTC	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	101, 402, 704
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	4 cut(s)	152, 304, 462, 495
SfaNI	GCATC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	409, 433, 505
SmoI	CTYRAG	3 cut(s)	409, 433, 505
Sse9I	AATT	3 cut(s)	230, 262, 344
SspMI	CTAG	2 cut(s)	426, 765
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	2 cut(s)	564, 861
TaaI	ACNGT	3 cut(s)	21, 282, 758
TaqI	TCGA	2 cut(s)	95, 715
TasI	AATT	3 cut(s)	230, 262, 344
TfiI	GAWTC	2 cut(s)	422, 854
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	100, 401, 703
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	152, 164
XbaI	TCTAGA	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	2 cut(s)	426, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.