Rh6AG014500

BOI-related E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003008
Physical Location & Seq
Reverse (-)
1514897 .. 1516900
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG014500.1

Sequence Viewer

Length: 837 bp
ATGGCTATTGAAGCGCAGTTGTATTCAGAGAATCTTGGGTTTCCGATGTTTGGCTCACAATCGCAGAATTTGATGGTGGACAACAACAATGGTTGTGGTGGTTCTGGCGGTGGGTTTAATCAGTTCTGTTTCAATGTCCAGCAGAAACCGCCGCAGCTACTACAATACCAGCCACCACCGATGAATCCTGCTGTGCTTGTTCCAGCTTTGCACAACAACAACATCATGGCTTATACTCGACAGAGTATTGCAGCTCAGGAAGCCAAGCAAAGGCAAGAGATTGATGACTATCTCAGATTACAGAATGAGAGATTGAGATTGGTGCTACAAGAGCAGAGAAAGCAGCAACTCGCAATGTTGATGAAGAAAATCGAATCCAGAACAGAACTACTATTGAAGCAAAAGGATGAAGAAATAGCACAAGCGGTGAAGAAGAGAATGGAGCTCGAAGATTTCTTGAGGAAATTGGAGGCTGAAAACCAAGCGTGGCAAAGAGTGGCTCAGGAGAAGGAAGCCGTGGTTGTGTCCTTAAACAACACTCTTGAACAGTTCAGAGAGAGAGCCGCTTGTGGTGCCATGGAAGATGCAGAGTCTTGCTGTGATAGTAAACAAGAGGAGGAAGAAGAAGACACAGGCGATTACAGAGGAGGCTTTAATAATGGCGTGAACGAAGAGATAAAGATGATGGTTTGCAAAGGCTGCAATTCTAAAAGGTCGTGTGTCTTGTTCCTCCCCTGCAGGCATCTTTGTTCATGCAAAGCCTGTGAGGCTGGCTTTGATGCTTGTCCTGTTTGCACAACGCCAAAGAAGGCTAGCATAGAGGCATTGATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

278

Amino Acids

31.43

Weight (kDa)

5.28

Isoelectric Point (pI)

71.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 229 - 270 9.8e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 5 cut(s) 108, 149, 152, 425, 564
AcsI RAATTY 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 50, 270
AgsI TTSAA 4 cut(s) 11, 133, 397, 545
AluBI AGCT 4 cut(s) 157, 206, 254, 445
AluI AGCT 4 cut(s) 157, 206, 254, 445
Alw21I GWGCWC 1 cut(s) 447
ApeKI GCWGC 4 cut(s) 154, 251, 343, 699
ApoI RAATTY 1 cut(s) 67
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 439
AsuNHI GCTAGC 1 cut(s) 812
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 166, 263, 355, 686
BccI CCATC 2 cut(s) 67, 679
BceAI ACGGC 1 cut(s) 500
BfaI CTAG 2 cut(s) 813, 835
BfmI CTRYAG 1 cut(s) 736
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 6 cut(s) 152, 155, 252, 344, 564, 700
BlsI GCNGC 6 cut(s) 153, 156, 253, 345, 565, 701
BmiI GGNNCC 1 cut(s) 574
BmsI GCATC 3 cut(s) 574, 751, 769
BmtI GCTAGC 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 633
Bpu10I CCTNAGC 2 cut(s) 255, 501
BpuEI CTTGAG 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 516, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 270
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 516, 576
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 50, 270
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 269, 307, 515
BseRI GAGGAG 2 cut(s) 629, 660
BseXI GCAGC 4 cut(s) 166, 263, 355, 686
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 50, 270
Bsp1286I GDGCHC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 5 cut(s) 108, 149, 152, 425, 564
BspCNI CTCAG 3 cut(s) 268, 306, 514
BspLI GGNNCC 1 cut(s) 574
BspMAI CTGCAG 1 cut(s) 740
BspOI GCTAGC 1 cut(s) 816
BspT107I GGYRCC 1 cut(s) 572
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 516, 576
BssT1I CCWWGG 1 cut(s) 576
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 2 cut(s) 428, 666
BstAPI GCANNNNNTGC 1 cut(s) 699
BstC8I GCNNGC 3 cut(s) 740, 772, 814
BstDEI CTNAG 3 cut(s) 255, 293, 501
BstDSI CCRYGG 2 cut(s) 516, 576
BstF5I GGATG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 8 cut(s) 11, 148, 260, 331, 340, 572, 699, 767
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 4 cut(s) 166, 263, 355, 686
BstV2I GAAGAC 1 cut(s) 633
BtgI CCRYGG 2 cut(s) 516, 576
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 740, 772, 814
CfoI GCGC 1 cut(s) 16
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 226, 577, 753
DdeI CTNAG 3 cut(s) 255, 293, 501
Eam1104I CTCTTC 2 cut(s) 428, 666
EarI CTCTTC 2 cut(s) 428, 666
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 229, 580, 756
FaiI YATR 5 cut(s) 227, 234, 578, 754, 818
FatI CATG 3 cut(s) 225, 576, 752
Fnu4HI GCNGC 6 cut(s) 152, 155, 252, 344, 564, 700
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 6 cut(s) 152, 155, 252, 344, 564, 700
FspBI CTAG 2 cut(s) 813, 835
GlaI GCGC 1 cut(s) 15
GluI GCNGC 6 cut(s) 152, 155, 252, 344, 564, 700
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 229, 580, 756
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 4 cut(s) 31, 184, 374, 590
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 3 cut(s) 79, 608, 667
Hpy188I TCNGA 4 cut(s) 28, 45, 296, 554
Hpy188III TCNNGA 5 cut(s) 257, 378, 457, 503, 542
Hpy8I GTNNAC 3 cut(s) 79, 608, 667
HpyAV CCTTC 2 cut(s) 502, 802
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 8 cut(s) 211, 251, 587, 693, 702, 738, 756, 795
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 148, 260, 331, 340, 572, 699, 767
HpyF3I CTNAG 3 cut(s) 255, 293, 501
Hsp92II CATG 3 cut(s) 229, 580, 756
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 4 cut(s) 166, 263, 355, 686
LweI GCATC 3 cut(s) 574, 751, 769
MaeI CTAG 2 cut(s) 813, 835
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 3 cut(s) 67, 464, 703
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 9 cut(s) 453, 463, 607, 610, 638, 641, 740, 760, 814
MseI TTAA 3 cut(s) 117, 530, 654
MwoI GCNNNNNNNGC 8 cut(s) 11, 148, 260, 331, 340, 572, 699, 767
NcoI CCATGG 1 cut(s) 576
NheI GCTAGC 1 cut(s) 812
NlaIII CATG 3 cut(s) 229, 580, 756
NlaIV GGNNCC 1 cut(s) 574
PfeI GAWTC 3 cut(s) 31, 184, 374
PkrI GCNGC 6 cut(s) 153, 156, 253, 345, 565, 701
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 574
PstI CTGCAG 1 cut(s) 740
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 117, 530, 654
SatI GCNGC 6 cut(s) 152, 155, 252, 344, 564, 700
SbfI CCTGCAGG 1 cut(s) 740
SchI GAGTC 1 cut(s) 599
SdaI CCTGCAGG 1 cut(s) 740
SduI GDGCHC 1 cut(s) 447
SetI ASST 5 cut(s) 159, 208, 256, 447, 716
SfaNI GCATC 3 cut(s) 574, 751, 769
SfcI CTRYAG 1 cut(s) 736
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse8387I CCTGCAGG 1 cut(s) 740
Sse9I AATT 3 cut(s) 67, 464, 703
SsiI CCGC 5 cut(s) 108, 149, 152, 425, 564
SspMI CTAG 2 cut(s) 813, 835
SstI GAGCTC 1 cut(s) 447
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 238, 372, 447
TasI AATT 3 cut(s) 67, 464, 703
TauI GCSGC 2 cut(s) 154, 566
TfiI GAWTC 3 cut(s) 31, 184, 374
Tru1I TTAA 3 cut(s) 117, 530, 654
Tru9I TTAA 3 cut(s) 117, 530, 654
TseI GCWGC 4 cut(s) 154, 251, 343, 699
TspDTI ATGAA 4 cut(s) 197, 377, 423, 741
XapI RAATTY 1 cut(s) 67
XspI CTAG 2 cut(s) 813, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.