Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241681.1

Orthogroup ID

OG0003008

Physical Location & Seq

Genomic Coordinates Reverse (-)

183 .. 659

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaagaaaatcgagtccagaacagagctactattgaagcaaaaggatgaagaaatagcacaagcggtgaagaagagaatggagctcgaagatttcttgaggaaattggaggctgaaaaccaagcgtggcaaagagtggctcaggagaatgaagccatcgttgtgtccttaaacaacactcttgaacagttcagagagagagccgcttgtggtgccatggaagatgcagagtcttgctgtgatagtaaacaagaggaggaagaagaagacacaggggattacagaggaggctttaataatggcgtgaacgaagagataaagatgatggtttgcaaaggctgcaattctaaaaggtcgtgtgtcttgttcctcccctgcaggcatctttgttcatgcaaagcctgtgaggctggctttgattcttgtcctgtttgcacaacgccaaagaaggccagcatagaggcattgattttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008589 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

158

Amino Acids

17.87

Weight (kDa)

4.97

Isoelectric Point (pI)

70.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35070 AT4G35070
fragaria_vesca	FvH4_2g01150 FvH4_2g01150 FvH4_2g01150 FvH4_2g24010 FvH4_2g38140 FvH4_6g29461
malus_domestica	MD05G1122000.v1.1 MD08G1010000.v1.1 MD10G1124700.v1.1 MD15G1009900.v1.1
prunus_persica	Prupe.1G362300_v2.0.a1 Prupe.8G165800_v2.0.a1
pyrus_communis	pycom05g11600 pycom10g10700
rosa_chinensis	RchiOBHm_Chr6g0251771 RchiOBHm_Chr6g0303341
rosa_laevigata	RLG00000011090 RLG00000015431
rosa_multiflora	Rmu_co8241681.1_g000001 Rmu_ssc0000114.1_g000062 Rmu_ssc0000213.1_g000110 Rmu_ssc0000213.1_g000111
rosa_roxburghii	Rroxscaffold_7G00164850 Rroxscaffold_7G00216410
rosa_rugosa	Rorug05G0503800 Rorug06G0320800
rosa_samantha	Rh6AG014500 Rh6AG435000 Rh6BG013000 Rh6BG468100 Rh6CG010000 Rh6CG447100 Rh6DG011200 Rh6DG433900
rosa_wichuraiana	Rw6G001450 Rw6G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	65, 204
AgsI	TTSAA	2 cut(s)	37, 185
AluBI	AGCT	2 cut(s)	28, 85
AluI	AGCT	2 cut(s)	28, 85
Alw21I	GWGCWC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	2 cut(s)	164, 319
BfaI	CTAG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	204, 340
BlsI	GCNGC	2 cut(s)	205, 341
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	2 cut(s)	214, 391
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	269, 300
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	2 cut(s)	65, 204
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	68, 306
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	380, 412, 454
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 339, 407
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	380, 412, 454
CviAII	CATG	2 cut(s)	217, 393
DdeI	CTNAG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	68, 306
EarI	CTCTTC	2 cut(s)	68, 306
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	220, 396
FaiI	YATR	3 cut(s)	218, 394, 458
FatI	CATG	2 cut(s)	216, 392
Fnu4HI	GCNGC	2 cut(s)	204, 340
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	204, 340
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	2 cut(s)	204, 340
HaeIII	GGCC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	220, 396
HinfI	GANTC	3 cut(s)	14, 230, 419
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	248, 307
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	4 cut(s)	18, 97, 143, 182
Hpy8I	GTNNAC	2 cut(s)	248, 307
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	227, 333, 342, 378, 396, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 339, 407
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	220, 396
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	9 cut(s)	31, 128, 258, 364, 388, 396, 415, 441, 466
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	2 cut(s)	214, 391
MaeI	CTAG	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	104, 343
MlyI	GAGTC	2 cut(s)	23, 239
MnlI	CCTC	9 cut(s)	93, 103, 247, 250, 278, 281, 380, 400, 454
MseI	TTAA	2 cut(s)	170, 294
MslI	CAYNNNNRTG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	212, 339, 407
NcoI	CCATGG	1 cut(s)	216
NlaIII	CATG	2 cut(s)	220, 396
NlaIV	GGNNCC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	205, 341
PleI	GAGTC	2 cut(s)	22, 238
PpsI	GAGTC	2 cut(s)	22, 238
Psp124BI	GAGCTC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	170, 294
SatI	GCNGC	2 cut(s)	204, 340
SbfI	CCTGCAGG	1 cut(s)	380
SchI	GAGTC	2 cut(s)	23, 239
SdaI	CCTGCAGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	3 cut(s)	30, 87, 356
SfaNI	GCATC	2 cut(s)	214, 391
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse8387I	CCTGCAGG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	104, 343
SsiI	CCGC	2 cut(s)	65, 204
SspMI	CTAG	1 cut(s)	475
SstI	GAGCTC	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	12, 87
TasI	AATT	2 cut(s)	104, 343
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	170, 294
Tru9I	TTAA	2 cut(s)	170, 294
TseI	GCWGC	1 cut(s)	339
TspDTI	ATGAA	4 cut(s)	17, 63, 165, 381
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.