Rmu_ssc0000213.1_g000109

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
OG0018204
Physical Location & Seq
Reverse (-)
425983 .. 426780
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000109.1.cds

Sequence Viewer

Length: 495 bp
atgtcgtctcagaagaaatcgatcaccctgaagagctccgacggcgagagcttcgacgtcgacgaggcggtggctctcgaatcggtgaccattaagaacatgctggaggacatcggcgccgagaatgcgattcccttgcacaacgtcaccggcgtcatcttggggaaggtgatcgagtactgccggaagcacgtcgaggagggcaaagattccgacaaggatagggccggcgatttcgtcaagcccggcgactcgcctctcaaggcttgggacgccgatttcgtcaaggtcgagcagagtgtgctgtttgacatcattttggctgcaaactatctggacattaaggggctgctggatttgacgtgccagactgtggcagacatgatcaaggggaagaatgcagaagagattcgcaagcatttcaacatcaagaatgactacactccagaggaagaagaggaggttcggagggagaatcaatgggcatttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

164

Amino Acids

18.42

Weight (kDa)

4.67

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018204)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251761
rosa_laevigata RLG00000015432 RLG00000015436
rosa_multiflora Rmu_sc0029157.1_g000001 Rmu_ssc0000213.1_g000100 Rmu_ssc0000213.1_g000109
rosa_roxburghii Rroxscaffold_7G00216430 Rroxscaffold_7G00216450
rosa_rugosa Rorug05G0503800
rosa_samantha Rh6AG014400
rosa_wichuraiana Rw6G001440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 60
AciI CCGC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 4 cut(s) 57, 117, 153, 273
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 1 cut(s) 424
AjiI CACGTC 2 cut(s) 193, 363
AluBI AGCT 2 cut(s) 36, 51
AluI AGCT 2 cut(s) 36, 51
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 323, 349
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 16, 97, 139, 181
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 310, 336
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 2 cut(s) 324, 350
BlsI GCNGC 2 cut(s) 325, 351
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 246
BmgBI CACGTC 2 cut(s) 193, 363
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 246
BpmI CTGGAG 2 cut(s) 125, 429
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 20
BsaHI GRCGYC 4 cut(s) 57, 117, 153, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 2 cut(s) 149, 227
BseCI ATCGAT 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 2 cut(s) 212, 473
BseXI GCAGC 2 cut(s) 310, 336
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 4 cut(s) 150, 184, 228, 246
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 2 cut(s) 130, 403
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 21, 171, 384
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 116
BsrFI RCCGGY 2 cut(s) 149, 227
BssAI RCCGGY 2 cut(s) 149, 227
BssMI GATC 3 cut(s) 21, 171, 384
BssNI GRCGYC 4 cut(s) 57, 117, 153, 273
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 3 cut(s) 26, 399, 450
BstACI GRCGYC 4 cut(s) 57, 117, 153, 273
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 229, 416
BstDEI CTNAG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 3 cut(s) 24, 174, 387
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 21, 171, 384
BstMWI GCNNNNNNNGC 4 cut(s) 42, 125, 272, 301
BstNSI RCATGY 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 310, 336
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 20
BtrI CACGTC 2 cut(s) 193, 363
Cac8I GCNNGC 2 cut(s) 229, 416
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 149, 227
Cfr13I GGNCC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 20
CseI GACGC 2 cut(s) 142, 281
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 100, 382
CviJI RGCY 8 cut(s) 36, 51, 74, 227, 244, 266, 323, 349
CviKI_1 RGCY 8 cut(s) 36, 51, 74, 227, 244, 266, 323, 349
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 9
DinI GGCGCC 1 cut(s) 118
DpnI GATC 3 cut(s) 23, 173, 386
DpnII GATC 3 cut(s) 21, 171, 384
Eam1104I CTCTTC 3 cut(s) 26, 399, 450
EarI CTCTTC 3 cut(s) 26, 399, 450
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 2 cut(s) 103, 385
FaiI YATR 2 cut(s) 101, 383
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 99, 381
FbaI TGATCA 1 cut(s) 384
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 324, 350
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 324, 350
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 324, 350
GsuI CTGGAG 2 cut(s) 125, 429
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 227
HapII CCGG 4 cut(s) 150, 184, 228, 246
HgaI GACGC 2 cut(s) 142, 281
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 4 cut(s) 57, 117, 153, 273
Hin1II CATG 2 cut(s) 103, 385
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 6 cut(s) 80, 130, 209, 251, 409, 475
HpaII CCGG 4 cut(s) 150, 184, 228, 246
HphI GGTGA 4 cut(s) 16, 97, 139, 181
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 12, 40, 214, 468
Hpy188III TCNNGA 4 cut(s) 77, 335, 430, 446
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 5 cut(s) 44, 59, 62, 65, 197
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 4 cut(s) 57, 144, 192, 362
HpyCH4V TGCA 3 cut(s) 139, 326, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 125, 272, 301
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 4 cut(s) 57, 144, 192, 362
Hsp92I GRCGYC 4 cut(s) 57, 117, 153, 273
Hsp92II CATG 2 cut(s) 103, 385
HspAI GCGC 1 cut(s) 117
KasI GGCGCC 1 cut(s) 116
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 3 cut(s) 21, 171, 384
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 310, 336
MaeII ACGT 4 cut(s) 57, 144, 192, 362
MaeIII GTNAC 2 cut(s) 85, 145
MalI GATC 3 cut(s) 23, 173, 386
MboI GATC 3 cut(s) 21, 171, 384
MboII GAAGA 6 cut(s) 25, 43, 406, 416, 464, 467
MhlI GDGCHC 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 63, 237
MnlI CCTC 9 cut(s) 58, 100, 190, 193, 267, 442, 451, 454, 462
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 2 cut(s) 93, 342
MspI CCGG 4 cut(s) 150, 184, 228, 246
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 2 cut(s) 130, 403
MwoI GCNNNNNNNGC 4 cut(s) 42, 125, 272, 301
NaeI GCCGGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 1 cut(s) 246
NdeII GATC 3 cut(s) 21, 171, 384
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 2 cut(s) 103, 385
NlaIV GGNNCC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 85, 145
NspI RCATGY 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 150, 279, 288
PctI GAATGC 2 cut(s) 130, 403
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 5 cut(s) 80, 130, 209, 409, 475
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 2 cut(s) 325, 351
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 93, 342
SatI GCNGC 2 cut(s) 324, 350
Sau3AI GATC 3 cut(s) 21, 171, 384
Sau96I GGNCC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 38
SetI ASST 9 cut(s) 38, 53, 60, 147, 171, 195, 291, 365, 465
SfoI GGCGCC 1 cut(s) 118
SgrAI CRCCGGYG 1 cut(s) 149
SgrDI CGTCGACG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SsiI CCGC 1 cut(s) 68
SspDI GGCGCC 1 cut(s) 116
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 4 cut(s) 60, 147, 195, 365
TaqI TCGA 7 cut(s) 20, 54, 60, 78, 174, 195, 291
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 5 cut(s) 80, 130, 209, 409, 475
Tru1I TTAA 2 cut(s) 93, 342
Tru9I TTAA 2 cut(s) 93, 342
TseFI GTSAC 2 cut(s) 85, 145
TseI GCWGC 2 cut(s) 323, 349
Tsp45I GTSAC 2 cut(s) 85, 145
Van91I CCANNNNNTGG 1 cut(s) 373
XceI RCATGY 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 408
ZraI GACGTC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.