RLG00000015436

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018204
Physical Location & Seq
Forward (+)
65978364 .. 65979592
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015436

Sequence Viewer

Length: 474 bp
ATGGCTAAAACCAAATTCTGGAACCTTCCGCGTTTCAATTTCCCTCCAAACGACGTTGGGTGTTTAATAAAATGCGCTACCCCAAAACGATGTCGTCTCAAGAATGCGATTCCCTTCCCCAACGTCACCGGCTTCATCTTGGGGAAGGTGATCGAATACTGCCGGAAGCACGTCGAGGAGGGCAAAGATTCCGACAAGGATAGGGCCGGCGATTTCGTCAAGCCCGCCGACTCGCCTATCAAGGCTTGGGACGCCGATTTCGTCAAGGTCGCAAACTATCTGGACATTAAGGGGCTGCTGGATTTGACGTGCCAGACGGTGGCAGACATGATCAAGGGGAAGACTCCAGAAGAGATTCGCAAGCATTTCAACATCAAGAATGACTATACTCCGGAGGAGGAGAGGAGTCTTCTGGCTTTGATATTGTTTCTAGATATATGGTTCGAGCTTGAATGCTGCAACCCTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

158

Amino Acids

17.95

Weight (kDa)

7.53

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 31 - 58 4.2e-08 Skp1 family, tetramerisation domain
Skp1 PF01466 97 - 136 1.4e-24 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018204)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251761
rosa_laevigata RLG00000015432 RLG00000015436
rosa_multiflora Rmu_sc0029157.1_g000001 Rmu_ssc0000213.1_g000100 Rmu_ssc0000213.1_g000109
rosa_roxburghii Rroxscaffold_7G00216430 Rroxscaffold_7G00216450
rosa_rugosa Rorug05G0503800
rosa_samantha Rh6AG014400
rosa_wichuraiana Rw6G001440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 18, 319
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 2 cut(s) 29, 225
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 18, 319
AgsI TTSAA 3 cut(s) 37, 370, 452
AjiI CACGTC 2 cut(s) 172, 309
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 1 cut(s) 448
AluI AGCT 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 295, 456
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 118, 160
BbsI GAAGAC 2 cut(s) 347, 401
BbvI GCAGC 2 cut(s) 282, 443
BciT130I CCWGG 1 cut(s) 465
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 296, 457
BlsI GCNGC 2 cut(s) 297, 458
Bme1390I CCNGG 1 cut(s) 465
BmgBI CACGTC 2 cut(s) 172, 309
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 465
BpiI GAAGAC 2 cut(s) 347, 401
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 319
Bse118I RCCGGY 2 cut(s) 128, 206
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 463
BseLI CCNNNNNNNGG 2 cut(s) 18, 319
BseRI GAGGAG 4 cut(s) 191, 410, 413, 418
BseXI GCAGC 2 cut(s) 282, 443
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 4 cut(s) 129, 163, 207, 392
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 18, 319
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 2 cut(s) 109, 458
BsnI GGCC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 150, 330
BspACI CCGC 2 cut(s) 29, 225
BspANI GGCC 1 cut(s) 206
BspEI TCCGGA 1 cut(s) 391
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 23
BsrFI RCCGGY 2 cut(s) 128, 206
BssAI RCCGGY 2 cut(s) 128, 206
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 2 cut(s) 150, 330
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 208, 225, 362
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 153, 333
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 150, 330
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 282, 443
BstV2I GAAGAC 2 cut(s) 347, 401
BsuRI GGCC 1 cut(s) 206
BtrI CACGTC 2 cut(s) 172, 309
Cac8I GCNNGC 3 cut(s) 208, 225, 362
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 2 cut(s) 128, 206
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 260
CviAII CATG 1 cut(s) 328
CviJI RGCY 8 cut(s) 5, 132, 206, 223, 245, 295, 416, 448
CviKI_1 RGCY 8 cut(s) 5, 132, 206, 223, 245, 295, 416, 448
DpnI GATC 2 cut(s) 152, 332
DpnII GATC 2 cut(s) 150, 330
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 463
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 1 cut(s) 331
FaiI YATR 4 cut(s) 329, 387, 437, 439
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 232
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 2 cut(s) 296, 457
Fsp4HI GCNGC 2 cut(s) 296, 457
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 296, 457
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 206
HapII CCGG 4 cut(s) 129, 163, 207, 392
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 6 cut(s) 109, 188, 230, 343, 355, 406
HpaII CCGG 4 cut(s) 129, 163, 207, 392
HphI GGTGA 2 cut(s) 118, 160
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 7 cut(s) 19, 100, 281, 347, 376, 392, 431
Hpy99I CGWCG 2 cut(s) 56, 176
HpyAV CCTTC 3 cut(s) 35, 124, 139
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 4 cut(s) 54, 123, 171, 308
HpyCH4V TGCA 1 cut(s) 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 4 cut(s) 54, 123, 171, 308
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 391
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 150, 330
Lsp1109I GCAGC 2 cut(s) 282, 443
MaeI CTAG 1 cut(s) 431
MaeII ACGT 4 cut(s) 54, 123, 171, 308
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 152, 332
MboI GATC 2 cut(s) 150, 330
MboII GAAGA 3 cut(s) 352, 362, 401
MluCI AATT 2 cut(s) 14, 37
MlyI GAGTC 3 cut(s) 224, 337, 415
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 54, 169, 172, 388, 391, 396
MroI TCCGGA 1 cut(s) 391
MroNI GCCGGC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 2 cut(s) 65, 288
MspI CCGG 4 cut(s) 129, 163, 207, 392
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 109, 458
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 251
NaeI GCCGGC 1 cut(s) 208
NdeII GATC 2 cut(s) 150, 330
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 109, 458
PdiI GCCGGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 109, 188, 355
PflMI CCANNNNNTGG 2 cut(s) 18, 319
PkrI GCNGC 2 cut(s) 297, 458
PleI GAGTC 3 cut(s) 224, 337, 414
PpsI GAGTC 3 cut(s) 224, 337, 414
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 65, 288
SatI GCNGC 2 cut(s) 296, 457
Sau3AI GATC 2 cut(s) 150, 330
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 3 cut(s) 224, 337, 415
ScrFI CCNGG 1 cut(s) 465
SetI ASST 8 cut(s) 27, 57, 126, 150, 174, 270, 311, 450
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 14, 37
SsiI CCGC 2 cut(s) 29, 225
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 4 cut(s) 57, 126, 174, 311
TaqI TCGA 3 cut(s) 153, 174, 444
TasI AATT 2 cut(s) 14, 37
TfiI GAWTC 3 cut(s) 109, 188, 355
Tru1I TTAA 2 cut(s) 65, 288
Tru9I TTAA 2 cut(s) 65, 288
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 295, 456
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 124
Van91I CCANNNNNTGG 2 cut(s) 18, 319
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.