Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0018204

Physical Location & Seq

Genomic Coordinates Reverse (-)

376007 .. 377194

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000100.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcttatgcttgatgtgacgttgcttatgtatattagacaaagttggctgtggcaattttctgagattcaggtttctggtttcgaatacggttggtttcgaatacggtgcaggaattcagcctgctttgataccaagttgaacacaagggttttggctaaaaacaaattcaagaaccttccgcgtttcaatttccctccaaaatgggctaccctaaaacgatgtcgtctcaagaatgcgtttcccttccccaacgtcaccggcttcatcttggggaaggtgatcgaatactgccggaagcacgtcgaggagggcaaagattcctacaaggataggaccggctatttcttcaagcccgccgactcgcctatcaaggctttggacgccgatttcgtcaaggtcgagcagagtgccgcaaactatctggacattaaggggctgctggatttgacgtgccagacggtggtagacatgatcaaggggaagactccagaagagattcgcaagcatttcaacatcaagaatgactatactccagagaaagaagaggaggtgcggagggagaatcaatgggcgtttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

194

Amino Acids

23.0

Weight (kDa)

9.22

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018204)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251761
rosa_laevigata	RLG00000015432 RLG00000015436
rosa_multiflora	Rmu_sc0029157.1_g000001 Rmu_ssc0000213.1_g000100 Rmu_ssc0000213.1_g000109
rosa_roxburghii	Rroxscaffold_7G00216430 Rroxscaffold_7G00216450
rosa_rugosa	Rorug05G0503800
rosa_samantha	Rh6AG014400
rosa_wichuraiana	Rw6G001440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	184
AciI	CCGC	4 cut(s)	182, 357, 414, 556
AcsI	RAATTY	2 cut(s)	115, 167
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	5 cut(s)	142, 172, 190, 352, 514
AjiI	CACGTC	2 cut(s)	304, 453
Alw26I	GTCTC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	2 cut(s)	115, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	250, 292
AsuII	TTCGAA	2 cut(s)	84, 100
AvaII	GGWCC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 392, 426
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	414, 440
BlsI	GCNGC	2 cut(s)	415, 441
Bme18I	GGWCC	1 cut(s)	336
BmgBI	CACGTC	2 cut(s)	304, 453
BmgT120I	GGNCC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	2 cut(s)	474, 519
Bpu14I	TTCGAA	2 cut(s)	84, 100
BpuEI	CTTGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse118I	RCCGGY	2 cut(s)	260, 338
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	323, 563
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	261, 295, 339
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	241
Bsp119I	TTCGAA	2 cut(s)	84, 100
Bsp143I	GATC	2 cut(s)	282, 474
BspACI	CCGC	4 cut(s)	182, 357, 414, 556
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	184
BspT104I	TTCGAA	2 cut(s)	84, 100
BsrFI	RCCGGY	2 cut(s)	260, 338
BssAI	RCCGGY	2 cut(s)	260, 338
BssMI	GATC	2 cut(s)	282, 474
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	92, 108, 463
Bst6I	CTCTTC	2 cut(s)	489, 540
BstACI	GRCGYC	1 cut(s)	384
BstBI	TTCGAA	2 cut(s)	84, 100
BstC8I	GCNNGC	3 cut(s)	124, 357, 506
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	285, 477
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	282, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	491
BtrI	CACGTC	2 cut(s)	304, 453
Cac8I	GCNNGC	3 cut(s)	124, 357, 506
Cfr10I	RCCGGY	2 cut(s)	260, 338
Cfr13I	GGNCC	1 cut(s)	336
CseI	GACGC	1 cut(s)	392
CviAII	CATG	1 cut(s)	472
CviJI	RGCY	9 cut(s)	49, 122, 158, 209, 264, 342, 355, 377, 439
CviKI_1	RGCY	9 cut(s)	49, 122, 158, 209, 264, 342, 355, 377, 439
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	284, 476
DpnII	GATC	2 cut(s)	282, 474
Eam1104I	CTCTTC	2 cut(s)	489, 540
EarI	CTCTTC	2 cut(s)	489, 540
Eco47I	GGWCC	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	475
FaiI	YATR	5 cut(s)	8, 29, 33, 473, 531
FatI	CATG	1 cut(s)	471
FauI	CCCGC	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	414, 440
Fsp4HI	GCNGC	2 cut(s)	414, 440
GluI	GCNGC	2 cut(s)	414, 440
GsuI	CTGGAG	2 cut(s)	474, 519
HapII	CCGG	3 cut(s)	261, 295, 339
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	475
HinfI	GANTC	6 cut(s)	67, 320, 362, 487, 499, 565
HpaII	CCGG	3 cut(s)	261, 295, 339
HphI	GGTGA	2 cut(s)	250, 292
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	6 cut(s)	172, 232, 425, 491, 520, 536
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	188, 256, 271
HpyCH4III	ACNGT	3 cut(s)	92, 108, 463
HpyCH4IV	ACGT	4 cut(s)	20, 255, 303, 452
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	4 cut(s)	20, 255, 303, 452
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	282, 474
Lsp1109I	GCAGC	1 cut(s)	426
MaeII	ACGT	4 cut(s)	20, 255, 303, 452
MaeIII	GTNAC	2 cut(s)	16, 256
MalI	GATC	2 cut(s)	284, 476
MboI	GATC	2 cut(s)	282, 474
MboII	GAAGA	4 cut(s)	340, 496, 506, 557
MluCI	AATT	4 cut(s)	56, 115, 167, 190
MlyI	GAGTC	2 cut(s)	356, 481
MnlI	CCTC	6 cut(s)	207, 301, 304, 541, 544, 552
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	432
MspI	CCGG	3 cut(s)	261, 295, 339
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	282, 474
NlaIII	CATG	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	16, 256
NspV	TTCGAA	2 cut(s)	84, 100
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 399
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	67, 320, 499, 565
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	415, 441
PleI	GAGTC	2 cut(s)	356, 481
PpsI	GAGTC	2 cut(s)	356, 481
PspPI	GGNCC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	2 cut(s)	414, 440
Sau3AI	GATC	2 cut(s)	282, 474
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	2 cut(s)	356, 481
SetI	ASST	9 cut(s)	23, 75, 180, 258, 282, 306, 402, 455, 555
SfuI	TTCGAA	2 cut(s)	84, 100
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	56, 115, 167, 190
SsiI	CCGC	4 cut(s)	182, 357, 414, 556
TaaI	ACNGT	3 cut(s)	92, 108, 463
TaiI	ACGT	4 cut(s)	23, 258, 306, 455
TaqI	TCGA	5 cut(s)	84, 100, 285, 306, 402
TasI	AATT	4 cut(s)	56, 115, 167, 190
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	67, 320, 499, 565
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	16, 256
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	2 cut(s)	16, 256
TspDTI	ATGAA	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	2 cut(s)	115, 167
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.