Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017432

Physical Location & Seq

Genomic Coordinates Reverse (-)

67142469 .. 67162136

Gene Structure 19668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015511

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAATTACACGAATTTAGATGACCCATATTCGGGAGGTGGAATTGGAATCTTACCTGAACCCATAAGCTTCGACAGATCACAGTGGAGGTTAAGTCTGCTGATTTTGTATGGGAATACTGACTGGTGGCTGGGTCTACTATTCAAATCTCCAGAAATACTTGAAGCTGTTGGTGCATGTCAAAAGACACCAATGGTAATGCACCAACAAAAGGATGCTAATGTTGCAAAGAGAGAAAGAAATAAAGGTGCAAAGCAACTTGATCCAAATTCCGATAAGGACTTATCCAGAGAACTTTCCAATAAAAAGTACCTCCTCACCCTTTGCTCAATCTCTTATGGAATTAACTCTCGGGGAATTATGAACAGGTACCTAAGAAAATCATGGGCAATCTCTGTGTTGGGAAAGGTGGATACTCTGAGGAAAAAGGTTATGTCTGTTAGAAAGGAACATGCATCTCTGTGGGCTAAGGTTTTAGAAAAAAGTTGGTTTTGGTTGGGAGCTATAGTAACTACTTCACTCATCAGGTTTCTAATAATGCATAAGAGTTCCTCTATCGCTAGAATGATGGTGTGCTGCAGTTGCTTTGGTTTCTTTATTGCTAGAGATCCCAAACTGAAAATGAAGCCCAATTATAGCTATAGTAGTCACCCTTCACAAGAGCATTTGTTGGATGATGCTTTAGAAGATGATGATACCCGACTCCTCTCCCTCAATCTTTCCATCCCCAAATCACCACCATGGATGCCAAGTTGTTACAACCTTCAGCCCGCAACACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

261

Amino Acids

29.65

Weight (kDa)

9.38

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017432)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485351 RchiOBHm_Chr3g0485361 RchiOBHm_Chr5g0059061
rosa_laevigata	RLG00000001763 RLG00000015511 RLG00000015514 RLG00000028620 RLG00000029722
rosa_roxburghii	Rroxscaffold_3G00257950 Rroxscaffold_6G00407520 Rroxscaffold_6G00417270
rosa_rugosa	Rorug04G0238800
rosa_samantha	Rh5CG420700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	2 cut(s)	257, 602
AcsI	RAATTY	2 cut(s)	13, 268
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	2 cut(s)	311, 371
AfiI	CCNNNNNNNGG	3 cut(s)	31, 32, 211
AgsI	TTSAA	2 cut(s)	145, 164
AluBI	AGCT	4 cut(s)	69, 167, 503, 639
AluI	AGCT	4 cut(s)	69, 167, 503, 639
AlwI	GGATC	2 cut(s)	257, 602
Ama87I	CYCGRG	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	2 cut(s)	13, 268
Asp718I	GGTACC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	310, 641, 726
AvaI	CYCGRG	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	637, 669
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	2 cut(s)	562, 731
BciVI	GTATCC	1 cut(s)	406
BfaI	CTAG	2 cut(s)	561, 603
BfmI	CTRYAG	3 cut(s)	504, 577, 640
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	4 cut(s)	205, 464, 667, 735
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	740
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 32, 211
Bse1I	ACTGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	4 cut(s)	220, 679, 723, 750
BseLI	CCNNNNNNNGG	3 cut(s)	31, 32, 211
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	305, 695
BseXI	GCAGC	1 cut(s)	563
BseYI	CCCAGC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	31, 32, 211
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	77, 262, 607
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	1 cut(s)	771
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	2 cut(s)	257, 602
BspT107I	GGYRCC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	3 cut(s)	77, 262, 607
BssT1I	CCWWGG	1 cut(s)	740
Bst4CI	ACNGT	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	374, 419, 468
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	4 cut(s)	220, 679, 723, 750
BstKTI	GATC	3 cut(s)	80, 265, 610
BstMBI	GATC	3 cut(s)	77, 262, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 224, 582
BstNSI	RCATGY	2 cut(s)	180, 455
BstSFI	CTRYAG	3 cut(s)	504, 577, 640
BstV1I	GCAGC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	4 cut(s)	220, 679, 723, 750
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	310, 370
CviAII	CATG	4 cut(s)	177, 384, 452, 741
CviJI	RGCY	8 cut(s)	69, 130, 167, 467, 503, 628, 639, 769
CviKI_1	RGCY	8 cut(s)	69, 130, 167, 467, 503, 628, 639, 769
CviQI	GTAC	2 cut(s)	310, 370
DdeI	CTNAG	3 cut(s)	374, 419, 468
DpnI	GATC	3 cut(s)	79, 264, 609
DpnII	GATC	3 cut(s)	77, 262, 607
Eco130I	CCWWGG	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	2 cut(s)	457, 543
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	4 cut(s)	180, 387, 455, 744
FatI	CATG	4 cut(s)	176, 383, 451, 740
FauI	CCCGC	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	4 cut(s)	227, 686, 710, 757
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	2 cut(s)	561, 603
GluI	GCNGC	1 cut(s)	577
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	135
Hin1II	CATG	4 cut(s)	180, 387, 455, 744
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	2 cut(s)	48, 702
HphI	GGTGA	3 cut(s)	310, 641, 726
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	274, 420
Hpy188III	TCNNGA	3 cut(s)	33, 152, 288
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	663, 773
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	176, 202, 227, 251, 455, 541, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 224, 582
HpyF3I	CTNAG	3 cut(s)	374, 419, 468
Hsp92II	CATG	4 cut(s)	180, 387, 455, 744
KpnI	GGTACC	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	77, 262, 607
LmnI	GCTCC	1 cut(s)	500
LpnPI	CCDG	7 cut(s)	69, 109, 116, 165, 301, 352, 511
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	4 cut(s)	205, 464, 667, 735
MaeI	CTAG	2 cut(s)	561, 603
MaeIII	GTNAC	3 cut(s)	508, 647, 755
MalI	GATC	3 cut(s)	79, 264, 609
MboI	GATC	3 cut(s)	77, 262, 607
MboII	GAAGA	1 cut(s)	698
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	7 cut(s)	4, 13, 42, 268, 342, 357, 631
MlyI	GAGTC	1 cut(s)	696
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	8 cut(s)	29, 81, 323, 326, 414, 562, 716, 722
Mph1103I	ATGCAT	2 cut(s)	457, 543
MseI	TTAA	2 cut(s)	92, 345
MslI	CAYNNNNRTG	2 cut(s)	460, 739
MwoI	GCNNNNNNNGC	3 cut(s)	173, 224, 582
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	3 cut(s)	77, 262, 607
NlaIII	CATG	4 cut(s)	180, 387, 455, 744
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	2 cut(s)	457, 543
NspI	RCATGY	2 cut(s)	180, 455
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	2 cut(s)	311, 371
RsaNI	GTAC	2 cut(s)	310, 370
RseI	CAYNNNNRTG	2 cut(s)	460, 739
SaqAI	TTAA	2 cut(s)	92, 345
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	3 cut(s)	77, 262, 607
SchI	GAGTC	1 cut(s)	696
SfaNI	GCATC	4 cut(s)	205, 464, 667, 735
SfcI	CTRYAG	3 cut(s)	504, 577, 640
SmiMI	CAYNNNNRTG	2 cut(s)	460, 739
Sse9I	AATT	7 cut(s)	4, 13, 42, 268, 342, 357, 631
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	2 cut(s)	561, 603
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	72
TasI	AATT	7 cut(s)	4, 13, 42, 268, 342, 357, 631
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	92, 345
Tru9I	TTAA	2 cut(s)	92, 345
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	17, 377, 638
TspRI	CASTG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	13, 268
XceI	RCATGY	2 cut(s)	180, 455
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	2 cut(s)	561, 603
Zsp2I	ATGCAT	2 cut(s)	457, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.