Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017432

Physical Location & Seq

Genomic Coordinates Reverse (-)

67234814 .. 67254457

Gene Structure 19644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015514

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACCCATATTCGGGAGGTGGAATTGGAATCTTACCTGAACCCACAAGCTTCGACAGATAACAGTGGAGAAATACCTGAAGTTGTTGGTGCATGTCAAAAGACACCAATGGTAATGCACCAACAAAAGGATGCTAATGTTGCAAAGAGAGAAAGAAATAAAGGTGCAAAGCAACTTGATCCAAAGTATATAGATTATTTCTCTTTTACTTTTCTCATATGGAATGACTTTTCAAAGATGACTGTGTTGGGAAAGGTGGATACTCTGAGGAAAAAGGTTATGCCTGTTAGAAAGGAACATGCATCTCTGTGTGCTAAGGTTTTAGAAAAAAGTTGGTTTTGGTTGGGAGCTATAGTAACTACTTCACTCATCAGGTTTCTAATAATGCATAAGAGTTCCTCTATCGCTAGAATGATGGTGTGCTGCAGTTGCTTTGGTTTCTTTATTGCTAGAGATCCCAAACTGAAAATGAAGCCCAATTATAGCTATAGTAGTCACCCTTCACAAAAGCATTTGTTGGATGATGCTTTAGAAGATGATGATACCCGACTCCTCTCCCTCAATCTTTCCATCCCCAAATCACCACCATGGATGCCAAGTTGTTACAACCTTCAGCCCGCAACACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

210

Amino Acids

23.92

Weight (kDa)

9.08

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017432)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485351 RchiOBHm_Chr3g0485361 RchiOBHm_Chr5g0059061
rosa_laevigata	RLG00000001763 RLG00000015511 RLG00000015514 RLG00000028620 RLG00000029722
rosa_roxburghii	Rroxscaffold_3G00257950 Rroxscaffold_6G00407520 Rroxscaffold_6G00417270
rosa_rugosa	Rorug04G0238800
rosa_samantha	Rh5CG420700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	2 cut(s)	173, 449
AcuI	CTGAAG	2 cut(s)	99, 596
AfiI	CCNNNNNNNGG	3 cut(s)	12, 13, 127
AgsI	TTSAA	1 cut(s)	234
AluBI	AGCT	3 cut(s)	50, 350, 486
AluI	AGCT	3 cut(s)	50, 350, 486
AlwI	GGATC	2 cut(s)	173, 449
ApeKI	GCWGC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	488, 573
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	2 cut(s)	409, 578
BciVI	GTATCC	1 cut(s)	253
BfaI	CTAG	2 cut(s)	408, 450
BfmI	CTRYAG	3 cut(s)	351, 424, 487
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
BmsI	GCATC	4 cut(s)	121, 311, 514, 582
Bpu10I	CCTNAGC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 13, 127
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	4 cut(s)	136, 526, 570, 597
BseLI	CCNNNNNNNGG	3 cut(s)	12, 13, 127
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	12, 13, 127
Bsp143I	GATC	2 cut(s)	178, 454
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	2 cut(s)	173, 449
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	2 cut(s)	178, 454
BssT1I	CCWWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	65, 244
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	266, 315
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	4 cut(s)	136, 526, 570, 597
BstKTI	GATC	2 cut(s)	181, 457
BstMBI	GATC	2 cut(s)	178, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 429
BstNSI	RCATGY	2 cut(s)	96, 302
BstSFI	CTRYAG	3 cut(s)	351, 424, 487
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	4 cut(s)	136, 526, 570, 597
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	618
CviAII	CATG	3 cut(s)	93, 299, 588
CviJI	RGCY	5 cut(s)	50, 350, 475, 486, 616
CviKI_1	RGCY	5 cut(s)	50, 350, 475, 486, 616
DdeI	CTNAG	2 cut(s)	266, 315
DpnI	GATC	2 cut(s)	180, 456
DpnII	GATC	2 cut(s)	178, 454
Eco130I	CCWWGG	1 cut(s)	587
Eco57I	CTGAAG	2 cut(s)	99, 596
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	2 cut(s)	304, 390
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	3 cut(s)	96, 302, 591
FatI	CATG	3 cut(s)	92, 298, 587
FauI	CCCGC	1 cut(s)	625
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	4 cut(s)	143, 533, 557, 604
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	408, 450
GluI	GCNGC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	96, 302, 591
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	2 cut(s)	29, 549
HphI	GGTGA	2 cut(s)	488, 573
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	510, 620
HpyCH4III	ACNGT	2 cut(s)	65, 244
HpyCH4V	TGCA	7 cut(s)	92, 118, 143, 167, 302, 388, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 429
HpyF3I	CTNAG	2 cut(s)	266, 315
Hsp92II	CATG	3 cut(s)	96, 302, 591
Kzo9I	GATC	2 cut(s)	178, 454
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	50, 90, 297, 358
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	4 cut(s)	121, 311, 514, 582
MaeI	CTAG	2 cut(s)	408, 450
MaeIII	GTNAC	3 cut(s)	355, 494, 602
MalI	GATC	2 cut(s)	180, 456
MboI	GATC	2 cut(s)	178, 454
MboII	GAAGA	1 cut(s)	545
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	2 cut(s)	23, 478
MlyI	GAGTC	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	5 cut(s)	10, 261, 409, 563, 569
Mph1103I	ATGCAT	2 cut(s)	304, 390
MslI	CAYNNNNRTG	2 cut(s)	307, 586
MwoI	GCNNNNNNNGC	2 cut(s)	140, 429
NcoI	CCATGG	1 cut(s)	587
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	2 cut(s)	178, 454
NlaIII	CATG	3 cut(s)	96, 302, 591
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	2 cut(s)	304, 390
NspI	RCATGY	2 cut(s)	96, 302
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	307, 586
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	2 cut(s)	178, 454
SchI	GAGTC	1 cut(s)	543
SfaNI	GCATC	4 cut(s)	121, 311, 514, 582
SfcI	CTRYAG	3 cut(s)	351, 424, 487
SmiMI	CAYNNNNRTG	2 cut(s)	307, 586
Sse9I	AATT	2 cut(s)	23, 478
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	2 cut(s)	408, 450
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	2 cut(s)	65, 244
TaqI	TCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	23, 478
TfiI	GAWTC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	70
XceI	RCATGY	2 cut(s)	96, 302
XspI	CTAG	2 cut(s)	408, 450
Zsp2I	ATGCAT	2 cut(s)	304, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.