Rorug04G0238800

CST complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017432
Physical Location & Seq
Reverse (-)
40592694 .. 40593697
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0238800.1

Sequence Viewer

Length: 690 bp
ATGATTTTTGCAGGATTGGATTTCCAAGGATGTCCAGATGGATATGAATGTCTTGGGATGGGTTTCAAGAAGAATGGTGGTTTCGAAATTCAGGGATGGCTTGATTTTACTGGTGGTGGTACGCAGCGGTTTGTGATGTGCTTTGGGATTCAGGATTCAGGATTCAGGATTCAAACAAATGCAGCCCTCTCGTCGTCGTTCTCCACCTGCGATGAAGAAGTAGGAACCGACCAATGGAACGAGCTGGACGAGGAGTACGCGTTCCTTTACGCCAACCCAGAAAACAAGAAGTTGGTGCTGGTCAAGTGCCTTGTAATAAACCATAAACTGTTGGTTGATGCTTTAGCTCAAGGCAGTAGTTCCGAAACGGTCCATCTCCAAATCATCGTTGACGACTATGTTGGAGAGAGTAATAATAATGGCAGCAGCAATTTAAAGAATTTGGAGACATTGGTGAAGAGCCTGGACACTCAGGTTCTGTGTAAATTAGATACTTGTTCCTCAAGTAATAGCAACAAGGCCTCAAGTTCAATAACAAGTACAACAACGGAGCCTGGTGGTACTGGAAGAATCTATCTTTCTTGGCCGGGCGCTGGAATGTACACTGCTAGAGGCGATTATGGAGCACCACCCCCGGCTCCTGTTTTTTTTGCCGACCGGTTCGCGTGGAATGGTTCAGCTTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTC1_2

Protein Analysis

229

Amino Acids

24.76

Weight (kDa)

4.53

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI31_Prot_N PF11566 68 - 164 4.8e-14 PI31 proteasome regulator N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AccII CGCG 2 cut(s) 260, 665
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 2 cut(s) 87, 439
AfaI GTAC 5 cut(s) 121, 257, 541, 562, 602
AfiI CCNNNNNNNGG 2 cut(s) 234, 593
AflIII ACRYGT 1 cut(s) 258
AgeI ACCGGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 67, 173, 531
AjnI CCWGG 2 cut(s) 462, 553
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 3 cut(s) 244, 347, 680
AluI AGCT 3 cut(s) 244, 347, 680
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 478
AoxI GGCC 2 cut(s) 519, 584
ApeKI GCWGC 4 cut(s) 124, 182, 423, 426
ApoI RAATTY 2 cut(s) 87, 439
AsiGI ACCGGT 1 cut(s) 657
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 2 cut(s) 588, 635
AsuHPI GGTGA 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 4 cut(s) 136, 194, 435, 438
BccI CCATC 4 cut(s) 32, 52, 90, 381
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 2 cut(s) 464, 555
BcnI CCSGG 2 cut(s) 588, 635
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 4 cut(s) 125, 183, 424, 427
BlsI GCNGC 4 cut(s) 126, 184, 425, 428
Bme1390I CCNGG 4 cut(s) 464, 555, 588, 635
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 226, 552, 639
BmrFI CCNGG 4 cut(s) 464, 555, 588, 635
BmsI GCATC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 3 cut(s) 333, 487, 508
BpuMI CCSGG 2 cut(s) 588, 635
BsaJI CCNNGG 2 cut(s) 25, 633
BsaWI WCCGGW 1 cut(s) 657
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 593
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 2 cut(s) 115, 568
BseBI CCWGG 2 cut(s) 464, 555
BseDI CCNNGG 2 cut(s) 25, 633
BseGI GGATG 3 cut(s) 35, 63, 101
BseLI CCNNNNNNNGG 2 cut(s) 234, 593
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 115, 568
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 4 cut(s) 136, 194, 435, 438
Bsh1236I CGCG 2 cut(s) 260, 665
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 2 cut(s) 521, 586
BshTI ACCGGT 1 cut(s) 657
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 3 cut(s) 587, 635, 658
BslI CCNNNNNNNGG 2 cut(s) 234, 593
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 2 cut(s) 521, 586
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 628
Bsp1407I TGTACA 1 cut(s) 600
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 521, 586
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 2 cut(s) 260, 665
BspLI GGNNCC 3 cut(s) 226, 552, 639
BspMI ACCTGC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 2 cut(s) 115, 568
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 2 cut(s) 25, 633
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 2 cut(s) 464, 555
Bst4CI ACNGT 2 cut(s) 330, 370
Bst6I CTCTTC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 35, 63, 101
BstFNI CGCG 2 cut(s) 260, 665
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 1 cut(s) 593
BstMAI GTCTC 1 cut(s) 440
BstMCI CGRYCG 1 cut(s) 658
BstNI CCWGG 2 cut(s) 464, 555
BstSCI CCNGG 4 cut(s) 462, 553, 586, 633
BstUI CGCG 2 cut(s) 260, 665
BstV1I GCAGC 4 cut(s) 136, 194, 435, 438
BsuRI GGCC 2 cut(s) 521, 586
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 35, 63, 101
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 603
BveI ACCTGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 478
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 5 cut(s) 120, 256, 540, 561, 601
CspAI ACCGGT 1 cut(s) 657
CviAII CATG 1 cut(s) 685
CviQI GTAC 5 cut(s) 120, 256, 540, 561, 601
DdeI CTNAG 1 cut(s) 471
DraI TTTAAA 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 462, 553
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 688
FaiI YATR 5 cut(s) 45, 324, 399, 621, 686
FatI CATG 1 cut(s) 684
Fnu4HI GCNGC 4 cut(s) 125, 183, 424, 427
FokI GGATG 3 cut(s) 42, 70, 108
Fsp4HI GCNGC 4 cut(s) 125, 183, 424, 427
FspBI CTAG 1 cut(s) 609
GlaI GCGC 1 cut(s) 592
GluI GCNGC 4 cut(s) 125, 183, 424, 427
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 2 cut(s) 521, 586
HapII CCGG 3 cut(s) 587, 635, 658
HhaI GCGC 1 cut(s) 593
Hin1II CATG 1 cut(s) 688
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 5 cut(s) 148, 155, 162, 169, 570
HpaII CCGG 3 cut(s) 587, 635, 658
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 391, 603
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 5 cut(s) 35, 67, 152, 159, 166
Hpy8I GTNNAC 2 cut(s) 391, 603
Hpy99I CGWCG 2 cut(s) 196, 199
HpyCH4III ACNGT 2 cut(s) 330, 370
HpyCH4V TGCA 2 cut(s) 11, 182
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 1 cut(s) 688
HspAI GCGC 1 cut(s) 591
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 3 cut(s) 550, 623, 643
Lsp1109I GCAGC 4 cut(s) 136, 194, 435, 438
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 609
MboII GAAGA 4 cut(s) 82, 227, 469, 579
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 4 cut(s) 87, 430, 439, 485
MluI ACGCGT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 5 cut(s) 197, 244, 511, 532, 605
MseI TTAA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 3 cut(s) 587, 635, 658
MspR9I CCNGG 4 cut(s) 464, 555, 588, 635
MvaI CCWGG 2 cut(s) 464, 555
MvnI CGCG 2 cut(s) 260, 665
NciI CCSGG 2 cut(s) 588, 635
NlaIII CATG 1 cut(s) 688
NlaIV GGNNCC 3 cut(s) 226, 552, 639
NspV TTCGAA 1 cut(s) 84
PaqCI CACCTGC 1 cut(s) 215
PceI AGGCCT 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 5 cut(s) 148, 155, 162, 169, 570
PinAI ACCGGT 1 cut(s) 657
PkrI GCNGC 4 cut(s) 126, 184, 425, 428
Psp6I CCWGG 2 cut(s) 462, 553
PspGI CCWGG 2 cut(s) 462, 553
PspN4I GGNNCC 3 cut(s) 226, 552, 639
PspPI GGNCC 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 478
RsaI GTAC 5 cut(s) 121, 257, 541, 562, 602
RsaNI GTAC 5 cut(s) 120, 256, 540, 561, 601
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 4 cut(s) 125, 183, 424, 427
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 4 cut(s) 464, 555, 588, 635
SduI GDGCHC 1 cut(s) 628
SetI ASST 5 cut(s) 209, 246, 349, 477, 682
SfaNI GCATC 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 3 cut(s) 348, 502, 523
SmoI CTYRAG 3 cut(s) 348, 502, 523
Sse9I AATT 4 cut(s) 87, 430, 439, 485
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 1 cut(s) 127
SspMI CTAG 1 cut(s) 609
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 4 cut(s) 462, 553, 586, 633
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 330, 370
TaqI TCGA 1 cut(s) 84
TasI AATT 4 cut(s) 87, 430, 439, 485
TatI WGTACW 2 cut(s) 539, 600
TfiI GAWTC 5 cut(s) 148, 155, 162, 169, 570
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 610
TseI GCWGC 4 cut(s) 124, 182, 423, 426
TspDTI ATGAA 3 cut(s) 60, 228, 673
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 2 cut(s) 87, 439
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.