RLG00000016502

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020021
Physical Location & Seq
Reverse (-)
7141169 .. 7142413
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016502

Sequence Viewer

Length: 312 bp
ATGAGGCGACGAGAACGGCTTCGTTTTGGACCCGGAGTCCGGCACAATTGTTCCAGTGGAGAAAAGTGGCGAGCAGCAGCAGCTAGCGAAGGTCGTGTAGTGGAAGAATTGGAGGCTTTAGAAAGCGAGAATGGGTTGCTGAGAAAAGGTGTGGAGGATCTCCGGCAAGAAATTGCCGGAGGGAGTTTGAATTTGGGGATGTACTGTGGAATGGAGAGTAGTGGGAATTGGGGCTCCAGTAACAATGAGAAGAAGTCGCAGGAGGGAGATGTGAATGAGGAGGAGTTGAAGAAGGCATTGATGGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.33

Weight (kDa)

5.53

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020021)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016502
rosa_multiflora Rmu_sc0004576.1_g000005
rosa_samantha Rh2AG258700 Rh2AG258800 Rh2AG258900 Rh2AG524200 Rh2DG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 2 cut(s) 190, 289
AhdI GACNNNNNGTC 1 cut(s) 35
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 74, 77, 80
ApoI RAATTY 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 33
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 86, 89, 92
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 75, 78, 81
BlsI GCNGC 3 cut(s) 76, 79, 82
Bme1390I CCNGG 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 29
BmeRI GACNNNNNGTC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 31, 235
BmrFI CCNGG 1 cut(s) 33
BmtI GCTAGC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 54, 237
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 54, 237
BseRI GAGGAG 2 cut(s) 293, 296
BseXI GCAGC 3 cut(s) 86, 89, 92
BsiSI CCGG 4 cut(s) 33, 40, 163, 177
BslI CCNNNNNNNGG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 31, 235
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 54, 237
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 72, 85
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 86, 89, 92
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 72, 85
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 4 cut(s) 19, 83, 116, 234
CviKI_1 RGCY 4 cut(s) 19, 83, 116, 234
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DriI GACNNNNNGTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 75, 78, 81
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 75, 78, 81
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 75, 78, 81
GsuI CTGGAG 1 cut(s) 220
HapII CCGG 4 cut(s) 33, 40, 163, 177
HinfI GANTC 1 cut(s) 36
HpaII CCGG 4 cut(s) 33, 40, 163, 177
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 83, 286
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 46, 53, 67, 176, 190, 245, 250
Lsp1109I GCAGC 3 cut(s) 86, 89, 92
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 116, 262, 301
MfeI CAATTG 1 cut(s) 46
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 5 cut(s) 46, 107, 171, 190, 226
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 6 cut(s) 106, 148, 173, 256, 271, 274
MroXI GAANNNNTTC 1 cut(s) 18
MspI CCGG 4 cut(s) 33, 40, 163, 177
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 33
NdeII GATC 1 cut(s) 157
NheI GCTAGC 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 31, 235
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 76, 79, 82
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 31, 235
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 3 cut(s) 75, 78, 81
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 236
SetI ASST 3 cut(s) 85, 94, 151
SinI GGWCC 1 cut(s) 29
Sse9I AATT 5 cut(s) 46, 107, 171, 190, 226
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 206
TasI AATT 5 cut(s) 46, 107, 171, 190, 226
TatI WGTACW 1 cut(s) 201
TscAI CASTG 1 cut(s) 61
TseI GCWGC 3 cut(s) 74, 77, 80
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.