Rh2AG258800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020021
Physical Location & Seq
Forward (+)
29623543 .. 29636048
12506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG258800.1

Sequence Viewer

Length: 234 bp
ATGGTGATCTTCGACGCGATATTTTTGAATGAAAAGAAATGGAAGTTAATAATGATTCAAAAGCATTTTGATTCAGTGTCGATGCCCAGCGCAGCATCGTCACCTATCTTAGCCGTCATCCTCAGCCAGGGTCCTCCTACACCGGAATATGGTTATAATTATAAAGGTAGATTTTGCAACCATTATCCTGTATATATATATAATTCTATAATGTATTTGGTGGATAAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

8.73

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020021)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016502
rosa_multiflora Rmu_sc0004576.1_g000005
rosa_samantha Rh2AG258700 Rh2AG258800 Rh2AG258900 Rh2AG524200 Rh2DG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 156, 162
AccII CGCG 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 127, 149
AgsI TTSAA 2 cut(s) 28, 59
AjnI CCWGG 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 16, 93
AvaII GGWCC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 128
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 72, 104
Bpu10I CCTNAGC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 149
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 127, 149
BseMII CTCAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 127, 149
Bsp143I GATC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 109, 122
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 1 cut(s) 23
CviJI RGCY 2 cut(s) 113, 126
CviKI_1 RGCY 2 cut(s) 113, 126
DdeI CTNAG 2 cut(s) 109, 122
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 126
FaiI YATR 9 cut(s) 150, 156, 162, 193, 195, 197, 199, 201, 209
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 93
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 90
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 55, 71
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 16, 93
Hpy99I CGWCG 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 109, 122
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 100, 113, 140, 156, 201
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 72, 104
MaeIII GTNAC 1 cut(s) 99
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MluCI AATT 2 cut(s) 157, 202
MnlI CCTC 2 cut(s) 131, 144
MseI TTAA 1 cut(s) 47
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 17
NdeII GATC 1 cut(s) 6
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 55, 71
PkrI GCNGC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 131
PsiI TTATAA 2 cut(s) 156, 162
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 106, 169, 231
SfaNI GCATC 2 cut(s) 72, 104
SgeI CNNG 6 cut(s) 28, 99, 139, 140, 155, 200
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 157, 202
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 2 cut(s) 12, 80
TasI AATT 2 cut(s) 157, 202
TfiI GAWTC 2 cut(s) 55, 71
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 131
XagI CCTNNNNNAGG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.