Rh2DG267100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0020021
Physical Location & Seq
Forward (+)
28916892 .. 28917501
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG267100.1

Sequence Viewer

Length: 312 bp
ATGAGGCGACGAGAACGGCGTCGTTTCAGACTTGGAGTCCTGCGCAATTGTTCCCGTGGAGAAGAGCGGCGAGCAGCAGCAGCTGGCGAAGGTCATGGAGCGGAAGAATTGGAGGCTTTACAAAGCGAGAATGGGTTGCTGAGAAAAGCTGTGGAGGATCTCTGGCAAGAAATCGCCAGAGGGAGTTTGAATTCAGGGATGTACCGTGGAATGGAGTGTTGTGGGAATTGGGGCTCCAACAATAATGAGAAGAAGTCGCAGGAAGGAGATGTGAGTGAGGAGGAGTTGAAGAAGGTACTGATGGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

7.73

Isoelectric Point (pI)

71.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020021)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016502
rosa_multiflora Rmu_sc0004576.1_g000005
rosa_samantha Rh2AG258700 Rh2AG258800 Rh2AG258900 Rh2AG524200 Rh2DG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 44
AccBSI CCGCTC 2 cut(s) 67, 101
AciI CCGC 2 cut(s) 67, 101
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 2 cut(s) 203, 297
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 190, 289
AhdI GACNNNNNGTC 1 cut(s) 35
AluBI AGCT 2 cut(s) 83, 149
AluI AGCT 2 cut(s) 83, 149
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 74, 77, 80
ApoI RAATTY 1 cut(s) 190
AspLEI GCGC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 86, 89, 92
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 32
BisI GCNGC 4 cut(s) 68, 75, 78, 81
BlsI GCNGC 4 cut(s) 69, 76, 79, 82
BmeRI GACNNNNNGTC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 55, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 55, 205
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 293, 296
BseXI GCAGC 3 cut(s) 86, 89, 92
BslI CCNNNNNNNGG 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 67, 101
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 57
BsrBI CCGCTC 2 cut(s) 67, 101
BssECI CCNNGG 2 cut(s) 55, 205
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 72, 85
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 2 cut(s) 55, 205
BstF5I GGATG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 86, 89, 92
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtgI CCRYGG 2 cut(s) 55, 205
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 72, 85
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 45
CseI GACGC 1 cut(s) 8
Csp6I GTAC 2 cut(s) 202, 296
CviAII CATG 1 cut(s) 95
CviJI RGCY 4 cut(s) 83, 116, 149, 234
CviKI_1 RGCY 4 cut(s) 83, 116, 149, 234
CviQI GTAC 2 cut(s) 202, 296
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DriI GACNNNNNGTC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 1 cut(s) 98
FaiI YATR 1 cut(s) 96
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 68, 75, 78, 81
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 4 cut(s) 68, 75, 78, 81
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 1 cut(s) 44
GluI GCNGC 4 cut(s) 68, 75, 78, 81
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 29
Hpy99I CGWCG 2 cut(s) 12, 24
HpyAV CCTTC 3 cut(s) 83, 257, 286
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 98, 239
LpnPI CCDG 6 cut(s) 53, 69, 148, 180, 190, 245
Lsp1109I GCAGC 3 cut(s) 86, 89, 92
MalI GATC 1 cut(s) 159
MbiI CCGCTC 2 cut(s) 67, 101
MboI GATC 1 cut(s) 157
MboII GAAGA 4 cut(s) 74, 116, 262, 301
MfeI CAATTG 1 cut(s) 46
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 4 cut(s) 46, 107, 190, 226
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 5 cut(s) 106, 148, 173, 271, 274
MspA1I CMGCKG 1 cut(s) 83
MunI CAATTG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PkrI GCNGC 4 cut(s) 69, 76, 79, 82
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 203, 297
RsaNI GTAC 2 cut(s) 202, 296
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 4 cut(s) 68, 75, 78, 81
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 85, 94, 151, 297
Sse9I AATT 4 cut(s) 46, 107, 190, 226
SsiI CCGC 2 cut(s) 67, 101
TaaI ACNGT 1 cut(s) 206
TasI AATT 4 cut(s) 46, 107, 190, 226
TauI GCSGC 1 cut(s) 70
TseI GCWGC 3 cut(s) 74, 77, 80
XapI RAATTY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.