Rmu_sc0004576.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004576.1
OG0020021
Physical Location & Seq
Forward (+)
15058 .. 15727
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004576.1_g000005.1.cds

Sequence Viewer

Length: 471 bp
ctgcatttcagagctcttccacaccgcgttagtgaaggggattcagaattgcgacggtggatgaggcgacgagaatggcatcgtttcggacctgaagtcctgcgcaattgttcccctggagaagagcggcgagtagcagcagctggcgaaggtcatgtagaagaagaagtacccacaacggttgaacgagctcgtctaggtcaccaatctcagcgaaaaggaccatcattactaccagagaggcgtggcgggggaggagtcgatctcttggaggctttacagagggagaatgggttgctgagaaaagctatggaggttctccggcaagaaatcgccggatggagtttgaattcggggatgtaccgtggaatggagagtagtgggaattggggctccagcaataatgagaagaagtcgcaggagggagatgtgagtgaggaggagttgaagaaggcactgatgggtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.6

Weight (kDa)

8.15

Isoelectric Point (pI)

75.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020021)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016502
rosa_multiflora Rmu_sc0004576.1_g000005
rosa_samantha Rh2AG258700 Rh2AG258800 Rh2AG258900 Rh2AG524200 Rh2DG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 127
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 25, 127, 249
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 171, 362
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 3 cut(s) 185, 349, 448
AhdI GACNNNNNGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 14, 143, 191, 308
AluI AGCT 4 cut(s) 14, 143, 191, 308
Alw21I GWGCWC 2 cut(s) 16, 193
AlwNI CAGNNNCTG 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 137, 140
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 89, 221
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 2 cut(s) 89, 221
BanII GRGCYC 3 cut(s) 16, 193, 395
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
Bbv12I GWGCWC 2 cut(s) 16, 193
BbvI GCAGC 2 cut(s) 149, 152
BccI CCATC 3 cut(s) 232, 333, 454
BciT130I CCWGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 128, 138, 141
BlsI GCNGC 3 cut(s) 129, 139, 142
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 89, 221
BmeRI GACNNNNNGTC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 89, 221
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpmI CTGGAG 2 cut(s) 138, 379
BsaJI CCNNGG 2 cut(s) 115, 364
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 115, 364
BseGI GGATG 3 cut(s) 66, 344, 363
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 224, 290
BseRI GAGGAG 3 cut(s) 270, 452, 455
BseXI GCAGC 2 cut(s) 149, 152
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 16, 193
BsiSI CCGG 2 cut(s) 322, 336
BslI CCNNNNNNNGG 1 cut(s) 370
Bsp1286I GDGCHC 3 cut(s) 16, 193, 395
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 25, 127, 249
BspCNI CTCAG 2 cut(s) 223, 291
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 394
BspQI GCTCTTC 2 cut(s) 21, 117
BsrBI CCGCTC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 115, 364
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 57, 181, 365
Bst6I CTCTTC 2 cut(s) 21, 117
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 210, 299
BstDSI CCRYGG 1 cut(s) 364
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 3 cut(s) 66, 344, 363
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 149, 152
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 3 cut(s) 66, 344, 363
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 89, 221
Csp6I GTAC 2 cut(s) 170, 361
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 1 cut(s) 155
CviJI RGCY 6 cut(s) 14, 143, 191, 275, 308, 393
CviKI_1 RGCY 6 cut(s) 14, 143, 191, 275, 308, 393
CviQI GTAC 2 cut(s) 170, 361
DdeI CTNAG 2 cut(s) 210, 299
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DriI GACNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 21, 117
Eam1105I GACNNNNNGTC 1 cut(s) 95
EarI CTCTTC 2 cut(s) 21, 117
Ecl136II GAGCTC 2 cut(s) 14, 191
Eco24I GRGCYC 3 cut(s) 16, 193, 395
Eco47I GGWCC 2 cut(s) 89, 221
Eco53kI GAGCTC 2 cut(s) 14, 191
Eco57I CTGAAG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 2 cut(s) 14, 191
EcoO65I GGTNACC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 3 cut(s) 16, 193, 395
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 311
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 128, 138, 141
FokI GGATG 3 cut(s) 73, 351, 370
FriOI GRGCYC 3 cut(s) 16, 193, 395
Fsp4HI GCNGC 3 cut(s) 128, 138, 141
FspBI CTAG 1 cut(s) 197
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 3 cut(s) 128, 138, 141
GsuI CTGGAG 2 cut(s) 138, 379
HapII CCGG 2 cut(s) 322, 336
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 41, 258
HpaII CCGG 2 cut(s) 322, 336
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 11, 46, 89
Hpy99I CGWCG 2 cut(s) 57, 72
HpyAV CCTTC 3 cut(s) 29, 143, 445
HpyCH4III ACNGT 3 cut(s) 57, 181, 365
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 210, 299
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 2 cut(s) 21, 117
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 2 cut(s) 149, 152
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 127
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 8, 134, 173, 176, 421, 460
MfeI CAATTG 1 cut(s) 106
MhlI GDGCHC 3 cut(s) 16, 193, 395
MluCI AATT 4 cut(s) 47, 106, 349, 385
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 9 cut(s) 57, 234, 248, 265, 276, 307, 415, 430, 433
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 322, 336
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 27
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 200
NsbI TGCGCA 1 cut(s) 104
PciSI GCTCTTC 2 cut(s) 21, 117
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 129, 139, 142
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Psp124BI GAGCTC 2 cut(s) 16, 193
Psp6I CCWGG 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 2 cut(s) 89, 221
PstNI CAGNNNCTG 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 2 cut(s) 171, 362
RsaNI GTAC 2 cut(s) 170, 361
SacI GAGCTC 2 cut(s) 16, 193
SapI GCTCTTC 2 cut(s) 21, 117
SatI GCNGC 3 cut(s) 128, 138, 141
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 89, 221
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 3 cut(s) 16, 193, 395
SetI ASST 8 cut(s) 16, 94, 145, 154, 193, 202, 310, 318
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 2 cut(s) 89, 221
Sse9I AATT 4 cut(s) 47, 106, 349, 385
SsiI CCGC 3 cut(s) 25, 127, 249
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 2 cut(s) 16, 193
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 57, 181, 365
TaqI TCGA 1 cut(s) 261
TasI AATT 4 cut(s) 47, 106, 349, 385
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 137, 140
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 89, 221
XapI RAATTY 1 cut(s) 349
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.