Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0020274

Physical Location & Seq

Genomic Coordinates Reverse (-)

9884405 .. 9884957

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAATCTCGACTCCCCTGATGTCATGCTGATTTACGATGGAGGGTTATACCATGGAAAATTAGGTCGTGACAAAGAAGGGTACGTGAATGTCTATGAAGTCGATCACCAATGCTGTAGATATGAAGATGTTATTTTCTATCAAGGAATGTCCTATGCTGTCACCTCGTATGGGAGAGCCGTAGCGGTTGATTCTTCCCTGAAGTTGACAACGGTTGTGGTTGCTTCTCCGTTATGTACTAATCACGATTGTGAGACACAGGAGAATCTGCTCAAGAGTGGCGTCAAATTCAAGGTCTATAAGTTGAATGCGCAATGGGTTGAGATGCAAGGTTCGGATTTGAGTGATCGGATATTGGTGGTTTTGGGTGGTGATCACTGTGGCTTCTCTGTTAATGCTAAAGATTTCCCAGGATGCAAAGGGAGTTGTATTTATTTCTCTGATAAAAATAGGTTTCAGGTGGGAGTGTTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

5.28

Isoelectric Point (pI)

20.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	33 - 158	4.9e-17	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10931
rosa_laevigata	RLG00000016774
rosa_multiflora	Rmu_sc0002559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144180
rosa_rugosa	Rorug02G0070700
rosa_samantha	Rh2DG122900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	312
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	2 cut(s)	83, 238
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	292, 307
AjnI	CCWGG	1 cut(s)	409
AleI	CACNNNNGTG	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	98, 154, 383
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	315, 404
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	52, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	52, 409
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	103, 346, 373
Bsp19I	CCATGG	1 cut(s)	52
BspACI	CCGC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	52, 409
BssMI	GATC	3 cut(s)	103, 346, 373
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	214, 380
BstACI	GRCGYC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	106, 349, 376
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	103, 346, 373
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	313
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	82, 237
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	2 cut(s)	25, 53
CviJI	RGCY	2 cut(s)	179, 384
CviKI_1	RGCY	2 cut(s)	179, 384
CviQI	GTAC	2 cut(s)	82, 237
DpnI	GATC	3 cut(s)	105, 348, 375
DpnII	GATC	3 cut(s)	103, 346, 373
Eco130I	CCWWGG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	2 cut(s)	28, 56
FaiI	YATR	9 cut(s)	26, 49, 54, 96, 123, 156, 171, 235, 300
FatI	CATG	2 cut(s)	24, 52
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	1 cut(s)	426
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	28, 56
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	4, 11, 191, 265
HphI	GGTGA	3 cut(s)	98, 154, 383
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	337, 351, 442
Hpy188III	TCNNGA	4 cut(s)	8, 68, 245, 274
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	214, 380
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	328, 417
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	28, 56
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	103, 346, 373
LpnPI	CCDG	6 cut(s)	30, 212, 245, 396, 423, 443
LweI	GCATC	2 cut(s)	315, 404
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	68, 160
MalI	GATC	3 cut(s)	105, 348, 375
MboI	GATC	3 cut(s)	103, 346, 373
MboII	GAAGA	2 cut(s)	137, 186
MluCI	AATT	2 cut(s)	59, 287
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	35, 175
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	52
NdeII	GATC	3 cut(s)	103, 346, 373
NlaIII	CATG	2 cut(s)	28, 56
NmuCI	GTSAC	2 cut(s)	68, 160
NsbI	TGCGCA	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	249
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	4, 191, 265
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Ppu21I	YACGTR	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	83, 238
RsaNI	GTAC	2 cut(s)	82, 237
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	103, 346, 373
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	411
SetI	ASST	7 cut(s)	67, 87, 167, 297, 334, 455, 462
SfaNI	GCATC	2 cut(s)	315, 404
SfcI	CTRYAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	59, 287
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	214, 380
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	9, 102, 471
TasI	AATT	2 cut(s)	59, 287
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	4, 191, 265
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	2 cut(s)	68, 160
Tsp45I	GTSAC	2 cut(s)	68, 160
TspDTI	ATGAA	3 cut(s)	17, 111, 138
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.