Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002559.1

Orthogroup ID

OG0020274

Physical Location & Seq

Genomic Coordinates Forward (+)

2656 .. 3995

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002559.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtccgtggctcgcttgcacgtccccgtccatgcaagcgaggtagtgatgttcatgtctaataaggctaacggattcgaattggcagaagcgtatgtgcttgtgggagtgcacaagttcgtcacgtcgatgaatctcgactcccctgatgtcatgctgatttacgatggagggttataccatggaaaattaggtcgtgacaatgtctatgaagtcgatcaccaatgctgtagatttgaagatgttattttctatcaaggaatgttctatgctgtcacttcgtatgggagagcagtagcggttgattcttccctgaagttgacgacggttgtggttgcttctccgttatgtgctaatcacgattgtgagacacacagggtgataagtttggtggaatcatccggggatctacttttagtacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

5.52

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10931
rosa_laevigata	RLG00000016774
rosa_multiflora	Rmu_sc0002559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144180
rosa_rugosa	Rorug02G0070700
rosa_samantha	Rh2DG122900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	2 cut(s)	22, 126
AleI	CACNNNNGTG	1 cut(s)	363
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	414
ApaLI	GTGCAC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	212, 391
AsuII	TTCGAA	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	403
BmgBI	CACGTC	2 cut(s)	22, 126
BmrFI	CCNGG	1 cut(s)	403
Bpu14I	TTCGAA	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	6, 181, 402
BseDI	CCNNGG	3 cut(s)	6, 181, 402
BseGI	GGATG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	217, 406
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	6, 181, 402
BssMI	GATC	2 cut(s)	217, 406
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	13, 17, 37
BstDSI	CCRYGG	2 cut(s)	6, 181
BstF5I	GGATG	1 cut(s)	398
BstKTI	GATC	2 cut(s)	220, 409
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	217, 406
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtgI	CCRYGG	2 cut(s)	6, 181
BtrI	CACGTC	2 cut(s)	22, 126
BtsCI	GGATG	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	13, 17, 37
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	4 cut(s)	32, 55, 154, 182
CviJI	RGCY	2 cut(s)	11, 68
CviKI_1	RGCY	2 cut(s)	11, 68
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	2 cut(s)	219, 408
DpnII	GATC	2 cut(s)	217, 406
DraIII	CACNNNGTG	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	4 cut(s)	35, 58, 157, 185
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	4 cut(s)	31, 54, 153, 181
FokI	GGATG	1 cut(s)	385
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	4 cut(s)	35, 58, 157, 185
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	5 cut(s)	75, 133, 140, 305, 395
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	212, 391
Hpy166II	GTNNAC	2 cut(s)	112, 321
Hpy188III	TCNNGA	3 cut(s)	137, 197, 359
Hpy8I	GTNNAC	2 cut(s)	112, 321
Hpy99I	CGWCG	2 cut(s)	130, 328
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	3 cut(s)	21, 125, 421
HpyCH4V	TGCA	3 cut(s)	19, 35, 112
HpySE526I	ACGT	3 cut(s)	21, 125, 421
Hsp92II	CATG	4 cut(s)	35, 58, 157, 185
Kzo9I	GATC	2 cut(s)	217, 406
LpnPI	CCDG	4 cut(s)	159, 326, 361, 415
MaeII	ACGT	3 cut(s)	21, 125, 421
MaeIII	GTNAC	3 cut(s)	121, 197, 274
MalI	GATC	2 cut(s)	219, 408
MboI	GATC	2 cut(s)	217, 406
MboII	GAAGA	2 cut(s)	251, 300
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	80, 188
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	34, 164
MslI	CAYNNNNRTG	2 cut(s)	128, 363
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	403
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	217, 406
NlaIII	CATG	4 cut(s)	35, 58, 157, 185
NmuCI	GTSAC	3 cut(s)	121, 197, 274
NspV	TTCGAA	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	75, 133, 305, 395
PflFI	GACNNNGTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	128, 363
Sau3AI	GATC	2 cut(s)	217, 406
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	24, 45, 128, 196, 424
SfcI	CTRYAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	128, 363
Sse9I	AATT	2 cut(s)	80, 188
SsiI	CCGC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	3 cut(s)	24, 128, 424
TaqI	TCGA	4 cut(s)	78, 128, 138, 216
TasI	AATT	2 cut(s)	80, 188
TfiI	GAWTC	4 cut(s)	75, 133, 305, 395
TseFI	GTSAC	3 cut(s)	121, 197, 274
Tsp45I	GTSAC	3 cut(s)	121, 197, 274
TspDTI	ATGAA	3 cut(s)	43, 146, 225
TspGWI	ACGGA	2 cut(s)	87, 333
Tth111I	GACNNNGTC	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.