Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020274

Physical Location & Seq

Genomic Coordinates Reverse (-)

10223550 .. 10223939

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAACTCATTAGACTTTCGAGGATTCGAATTGACAGAAGCGTATGTGCTTGTGGGAGTGCACAAGTTCGTCACGTCGATGAATCTCGACTCCCCTGATGTCATGCTGATTTACGATGGAGGGTTATACCATGGAAAATTAGGTCGTGACAAAGAAGGGTACGTGAATGTCTATGAAGTCGATCACCAATGCTGTAGATATGAAGATGTTATTTTCTATCAAGGAATGTTCTATGCTGTCACCTCGTATGGGAGAGCCGTAGCGGTTGATTCTTCCCTGAAGTTGACAACGGTTGTGGTTGCTTCTCCGTTATGTGCTAATCACGATTGTGAGACACACAGGGTGATAAGTTTGGTGGAATCATCCGGGGATCTACTTTTAGTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

129

Amino Acids

14.44

Weight (kDa)

5.02

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	46 - 129	5.2e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10931
rosa_laevigata	RLG00000016774
rosa_multiflora	Rmu_sc0002559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144180
rosa_rugosa	Rorug02G0070700
rosa_samantha	Rh2DG122900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	161, 384
AfiI	CCNNNNNNNGG	1 cut(s)	249
AjiI	CACGTC	1 cut(s)	75
AleI	CACNNNNGTG	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	378
ApaLI	GTGCAC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	176, 232, 355
AsuII	TTCGAA	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	367
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	130, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	130, 366
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	181, 370
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	130, 366
BssMI	GATC	2 cut(s)	181, 370
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	2 cut(s)	184, 373
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	181, 370
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	160, 383
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	2 cut(s)	103, 131
CviJI	RGCY	1 cut(s)	257
CviKI_1	RGCY	1 cut(s)	257
CviQI	GTAC	2 cut(s)	160, 383
DpnI	GATC	2 cut(s)	183, 372
DpnII	GATC	2 cut(s)	181, 370
DraIII	CACNNNGTG	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	106, 134
FaiI	YATR	9 cut(s)	45, 104, 127, 132, 174, 201, 234, 249, 313
FatI	CATG	2 cut(s)	102, 130
FokI	GGATG	1 cut(s)	349
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	106, 134
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	5 cut(s)	24, 82, 89, 269, 359
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	3 cut(s)	176, 232, 355
Hpy166II	GTNNAC	2 cut(s)	61, 285
Hpy188III	TCNNGA	3 cut(s)	86, 146, 323
Hpy8I	GTNNAC	2 cut(s)	61, 285
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	3 cut(s)	74, 162, 385
HpyCH4V	TGCA	1 cut(s)	61
HpySE526I	ACGT	3 cut(s)	74, 162, 385
Hsp92II	CATG	2 cut(s)	106, 134
Kzo9I	GATC	2 cut(s)	181, 370
LpnPI	CCDG	4 cut(s)	108, 290, 325, 379
MaeII	ACGT	3 cut(s)	74, 162, 385
MaeIII	GTNAC	3 cut(s)	70, 146, 238
MalI	GATC	2 cut(s)	183, 372
MboI	GATC	2 cut(s)	181, 370
MboII	GAAGA	2 cut(s)	215, 264
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	29, 137
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	14, 113, 253
MslI	CAYNNNNRTG	2 cut(s)	77, 327
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	181, 370
NlaIII	CATG	2 cut(s)	106, 134
NmuCI	GTSAC	3 cut(s)	70, 146, 238
NspV	TTCGAA	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	24, 82, 269, 359
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	2 cut(s)	161, 384
RsaNI	GTAC	2 cut(s)	160, 383
RseI	CAYNNNNRTG	2 cut(s)	77, 327
Sau3AI	GATC	2 cut(s)	181, 370
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	77, 145, 165, 245, 388
SfcI	CTRYAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	77, 327
Sse9I	AATT	2 cut(s)	29, 137
SsiI	CCGC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	3 cut(s)	77, 165, 388
TaqI	TCGA	5 cut(s)	19, 27, 77, 87, 180
TasI	AATT	2 cut(s)	29, 137
TfiI	GAWTC	4 cut(s)	24, 82, 269, 359
TseFI	GTSAC	3 cut(s)	70, 146, 238
Tsp45I	GTSAC	3 cut(s)	70, 146, 238
TspDTI	ATGAA	4 cut(s)	17, 95, 189, 216
TspGWI	ACGGA	1 cut(s)	297
VneI	GTGCAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.