Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020274

Physical Location & Seq

Genomic Coordinates Forward (+)

82127917 .. 82128459

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAACTCATTAGACTTTCGAGGATTCGAATTGGCAGAAGCTTATGTGCTTGTGGGAGTGCACAAGTTCGTCATGTCGACGAATCTCGACTCCGCTGTTGTCATGCTGATTTACGATGGAGGGTTATACCATGGAAAATTAGGTCGTGACAAAGAAGGGTACGTGAATGTCTATGAAGTCGATCACCAATGCTGTAGATATGAAGGTGTTATTTTCTATCAAGGAATGTTCTATGCTGTCACCTCGTATATGGGAGAGCCCGTAGCGGTTGATTCTTCCCTGAAGTTGACAGCGGTTGCGGTTGCTTCTCCCTTATGTGCTAATCACGATTGTGAGACGCACAGGGTGATAACTTTGGTGGAATCGTCCGGGGATCTACTTTTAGTTGAAAGAAGCTGTAGAAAAGGTTGGTGTGTTGTAGAGAATCTGATCGAGAGTGGCGTCAAATTCAAGGTCTATAAGTTGAATGCGGTTGAGAAGCAATGGCTTGAGATGCAAGCTTCGGATTTGAGTGAATCGGATATTGGTGGTTTTGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

180

Amino Acids

20.07

Weight (kDa)

4.96

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	20 - 166	1.5e-13	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0020274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10931
rosa_laevigata	RLG00000016774
rosa_multiflora	Rmu_sc0002559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144180
rosa_rugosa	Rorug02G0070700
rosa_samantha	Rh2DG122900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	5 cut(s)	93, 266, 293, 299, 470
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	389, 451, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	3 cut(s)	41, 396, 500
AluI	AGCT	3 cut(s)	41, 396, 500
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	381
ApaLI	GTGCAC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	446
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	176, 232, 358
AsuII	TTCGAA	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	193, 397
Bme1390I	CCNGG	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	130, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse3DI	GCAATG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	130, 369
BseMI	GCAATG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	472
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	63, 261
Bsp143I	GATC	3 cut(s)	181, 373, 429
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	5 cut(s)	93, 266, 293, 299, 470
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	130, 369
BssMI	GATC	3 cut(s)	181, 373, 429
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	184, 376, 432
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	181, 373, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	2 cut(s)	193, 397
BstSLI	GKGCMC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	498
CseI	GACGC	2 cut(s)	346, 430
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	73, 103, 131
CviJI	RGCY	5 cut(s)	41, 259, 396, 487, 500
CviKI_1	RGCY	5 cut(s)	41, 259, 396, 487, 500
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	3 cut(s)	183, 375, 431
DpnII	GATC	3 cut(s)	181, 373, 429
DraIII	CACNNNGTG	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	3 cut(s)	76, 106, 134
FatI	CATG	3 cut(s)	72, 102, 130
FblI	GTMKAC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	261
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	2 cut(s)	346, 430
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	76, 106, 134
HincII	GTYRAC	2 cut(s)	78, 288
HindII	GTYRAC	2 cut(s)	78, 288
HindIII	AAGCTT	2 cut(s)	39, 498
HinfI	GANTC	7 cut(s)	24, 82, 89, 272, 362, 424, 515
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	3 cut(s)	176, 232, 358
Hpy166II	GTNNAC	3 cut(s)	61, 78, 288
Hpy188I	TCNGA	3 cut(s)	429, 505, 520
Hpy188III	TCNNGA	4 cut(s)	86, 146, 326, 433
Hpy8I	GTNNAC	3 cut(s)	61, 78, 288
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	149, 197
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	61, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	76, 106, 134
Kzo9I	GATC	3 cut(s)	181, 373, 429
LpnPI	CCDG	3 cut(s)	293, 328, 382
LweI	GCATC	1 cut(s)	483
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	146, 238
MalI	GATC	3 cut(s)	183, 375, 431
MboI	GATC	3 cut(s)	181, 373, 429
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	63, 261
MluCI	AATT	3 cut(s)	29, 137, 446
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	14, 113, 253
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	95, 293
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	493
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	181, 373, 429
NlaIII	CATG	3 cut(s)	76, 106, 134
NmuCI	GTSAC	2 cut(s)	146, 238
NspV	TTCGAA	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	6 cut(s)	24, 82, 272, 362, 424, 515
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	76
Sau3AI	GATC	3 cut(s)	181, 373, 429
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	63, 261
SetI	ASST	9 cut(s)	43, 145, 165, 208, 245, 398, 409, 456, 502
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	193, 397
SfuI	TTCGAA	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	29, 137, 446
SsiI	CCGC	5 cut(s)	93, 266, 293, 299, 470
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	6 cut(s)	19, 27, 77, 87, 180, 432
TasI	AATT	3 cut(s)	29, 137, 446
TfiI	GAWTC	6 cut(s)	24, 82, 272, 362, 424, 515
TseFI	GTSAC	2 cut(s)	146, 238
Tsp45I	GTSAC	2 cut(s)	146, 238
TspDTI	ATGAA	3 cut(s)	17, 189, 216
VneI	GTGCAC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.