Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0020664

Physical Location & Seq

Genomic Coordinates Forward (+)

19050694 .. 19054065

Gene Structure 3372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAGATTTTTGAGGGGCTTCTGGCTTGGAGATCGAACTTGGCCGCCGATCAAGCTCTCGTGTGCCAGAGCTTGGACATCGTCGACGCTGTAGAGCACGGAGTTGATGATGGTAGCTCTGACGCCGAGATCGAAAGCGACGCGTGCAACGTTGGTGAGGAAGGAGATGGCAGCTTGGTTACTTCATTGCTCCCCATTGTGGTTTTCGTTAGCTTTGGAGAAAACCCATTACCCAGCAAGGTGTGTGATCCAGAAGAATACGGTTCATGTGACTCAGGCTGTACTGGTGGACTAAGTCAAAGATTGGAGCAAGAGAAGGACTACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

110

Amino Acids

11.54

Weight (kDa)

4.05

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020664)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017608
rosa_multiflora	Rmu_sc0000147.1_g000061
rosa_roxburghii	Rroxscaffold_7G00213870
rosa_samantha	Rh2AG050500 Rh5AG329400 Rh6BG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	45
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	73, 199
AflIII	ACRYGT	1 cut(s)	141
AluBI	AGCT	5 cut(s)	56, 72, 117, 174, 213
AluI	AGCT	5 cut(s)	56, 72, 117, 174, 213
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	167
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	104, 161
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	45, 172
BlsI	GCNGC	2 cut(s)	46, 173
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 199
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	73, 199
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	73, 199
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	32, 49, 129, 247
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	143
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	32, 49, 129, 247
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	274, 293
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	4 cut(s)	35, 52, 132, 250
BstMBI	GATC	4 cut(s)	32, 49, 129, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 144
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	145
CseI	GACGC	3 cut(s)	95, 131, 149
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	9 cut(s)	19, 26, 44, 56, 72, 117, 174, 213, 279
CviKI_1	RGCY	9 cut(s)	19, 26, 44, 56, 72, 117, 174, 213, 279
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	274, 293
DpnI	GATC	4 cut(s)	34, 51, 131, 249
DpnII	GATC	4 cut(s)	32, 49, 129, 247
EaeI	YGGCCR	1 cut(s)	42
FaeI	CATG	1 cut(s)	270
FaiI	YATR	1 cut(s)	268
FatI	CATG	1 cut(s)	266
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	45, 172
Fsp4HI	GCNGC	2 cut(s)	45, 172
GluI	GCNGC	2 cut(s)	45, 172
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	44
HgaI	GACGC	3 cut(s)	95, 131, 149
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	85, 290
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	85, 290
Hpy99I	CGWCG	3 cut(s)	86, 89, 143
HpyAV	CCTTC	2 cut(s)	155, 310
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 144
HpyF3I	CTNAG	2 cut(s)	274, 293
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	32, 49, 129, 247
LmnI	GCTCC	2 cut(s)	195, 307
LpnPI	CCDG	6 cut(s)	8, 80, 247, 261, 264, 270
Lsp1109I	GCAGC	1 cut(s)	183
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	178, 269
MalI	GATC	4 cut(s)	34, 51, 131, 249
MboI	GATC	4 cut(s)	32, 49, 129, 247
MboII	GAAGA	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	99
MluI	ACGCGT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	2 cut(s)	7, 151
MseI	TTAA	1 cut(s)	328
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	53, 144
NdeII	GATC	4 cut(s)	32, 49, 129, 247
NlaIII	CATG	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 147
PflFI	GACNNNGTC	2 cut(s)	80, 294
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	46, 173
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	233
PsyI	GACNNNGTC	2 cut(s)	80, 294
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	2 cut(s)	45, 172
Sau3AI	GATC	4 cut(s)	32, 49, 129, 247
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	58, 74, 119, 153, 176, 215, 243
SfcI	CTRYAG	1 cut(s)	90
SgrDI	CGTCGACG	1 cut(s)	83
SsiI	CCGC	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	35, 84, 132
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	174, 255
TspGWI	ACGGA	1 cut(s)	114
Tth111I	GACNNNGTC	2 cut(s)	80, 294
Van91I	CCANNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.