No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000017608 |
| rosa_multiflora | Rmu_sc0000147.1_g000061 |
| rosa_roxburghii | Rroxscaffold_7G00213870 |
| rosa_samantha | Rh2AG050500 Rh5AG329400 Rh6BG240900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 362, 364 |
| AclWI | GGATC | 3 cut(s) | 95, 108, 248 |
| AcuI | CTGAAG | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 289, 417 |
| AgsI | TTSAA | 1 cut(s) | 164 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| AlwI | GGATC | 3 cut(s) | 95, 108, 248 |
| AseI | ATTAAT | 1 cut(s) | 240 |
| AspLEI | GCGC | 1 cut(s) | 364 |
| AspS9I | GGNCC | 1 cut(s) | 83 |
| AvaII | GGWCC | 1 cut(s) | 83 |
| BamHI | GGATCC | 1 cut(s) | 100 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 399, 431 |
| BccI | CCATC | 2 cut(s) | 23, 303 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| Bme18I | GGWCC | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 1 cut(s) | 83 |
| BmiI | GGNNCC | 1 cut(s) | 102 |
| BmsI | GCATC | 1 cut(s) | 221 |
| Bse1I | ACTGG | 2 cut(s) | 247, 295 |
| BseGI | GGATG | 3 cut(s) | 15, 133, 314 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseNI | ACTGG | 2 cut(s) | 247, 295 |
| BseRI | GAGGAG | 1 cut(s) | 342 |
| Bsh1236I | CGCG | 2 cut(s) | 362, 364 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| Bsp1407I | TGTACA | 1 cut(s) | 415 |
| Bsp143I | GATC | 3 cut(s) | 100, 253, 357 |
| BspCNI | CTCAG | 1 cut(s) | 293 |
| BspFNI | CGCG | 2 cut(s) | 362, 364 |
| BspLI | GGNNCC | 1 cut(s) | 102 |
| BspPI | GGATC | 3 cut(s) | 95, 108, 248 |
| BsrGI | TGTACA | 1 cut(s) | 415 |
| BsrI | ACTGG | 2 cut(s) | 247, 295 |
| BssMI | GATC | 3 cut(s) | 100, 253, 357 |
| Bst4CI | ACNGT | 5 cut(s) | 121, 143, 195, 269, 349 |
| BstAUI | TGTACA | 1 cut(s) | 415 |
| BstDEI | CTNAG | 2 cut(s) | 280, 299 |
| BstF5I | GGATG | 3 cut(s) | 15, 133, 314 |
| BstFNI | CGCG | 2 cut(s) | 362, 364 |
| BstHHI | GCGC | 1 cut(s) | 364 |
| BstKTI | GATC | 3 cut(s) | 103, 256, 360 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 3 cut(s) | 100, 253, 357 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstUI | CGCG | 2 cut(s) | 362, 364 |
| BstX2I | RGATCY | 1 cut(s) | 100 |
| BstYI | RGATCY | 1 cut(s) | 100 |
| BtsCI | GGATG | 3 cut(s) | 15, 133, 314 |
| BtsIMutI | CAGTG | 3 cut(s) | 148, 254, 354 |
| CfoI | GCGC | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 1 cut(s) | 83 |
| Csp6I | GTAC | 2 cut(s) | 288, 416 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 293, 328 |
| CviAII | CATG | 2 cut(s) | 173, 273 |
| CviJI | RGCY | 1 cut(s) | 285 |
| CviKI_1 | RGCY | 1 cut(s) | 285 |
| CviQI | GTAC | 2 cut(s) | 288, 416 |
| DdeI | CTNAG | 2 cut(s) | 280, 299 |
| DpnI | GATC | 3 cut(s) | 102, 255, 359 |
| DpnII | GATC | 3 cut(s) | 100, 253, 357 |
| Eco47I | GGWCC | 1 cut(s) | 83 |
| Eco57I | CTGAAG | 1 cut(s) | 57 |
| FaeI | CATG | 2 cut(s) | 176, 276 |
| FaiI | YATR | 9 cut(s) | 114, 157, 174, 184, 207, 209, 232, 274, 426 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 2 cut(s) | 172, 272 |
| FokI | GGATG | 3 cut(s) | 2, 140, 321 |
| GlaI | GCGC | 1 cut(s) | 363 |
| HhaI | GCGC | 1 cut(s) | 364 |
| Hin1II | CATG | 2 cut(s) | 176, 276 |
| Hin6I | GCGC | 1 cut(s) | 362 |
| HinP1I | GCGC | 1 cut(s) | 362 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 3 cut(s) | 167, 176, 278 |
| Hpy166II | GTNNAC | 4 cut(s) | 49, 139, 296, 416 |
| Hpy188I | TCNGA | 1 cut(s) | 200 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 4 cut(s) | 49, 139, 296, 416 |
| HpyCH4III | ACNGT | 5 cut(s) | 121, 143, 195, 269, 349 |
| HpyCH4V | TGCA | 1 cut(s) | 23 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 2 cut(s) | 280, 299 |
| Hsp92II | CATG | 2 cut(s) | 176, 276 |
| HspAI | GCGC | 1 cut(s) | 362 |
| Kzo9I | GATC | 3 cut(s) | 100, 253, 357 |
| LmnI | GCTCC | 1 cut(s) | 320 |
| LpnPI | CCDG | 5 cut(s) | 27, 260, 267, 270, 276 |
| LweI | GCATC | 1 cut(s) | 221 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 3 cut(s) | 102, 255, 359 |
| MboI | GATC | 3 cut(s) | 100, 253, 357 |
| MboII | GAAGA | 3 cut(s) | 176, 272, 419 |
| MfeI | CAATTG | 1 cut(s) | 393 |
| MflI | RGATCY | 1 cut(s) | 100 |
| MluCI | AATT | 4 cut(s) | 7, 217, 241, 393 |
| MlyI | GAGTC | 1 cut(s) | 272 |
| MmeI | TCCRAC | 1 cut(s) | 110 |
| MnlI | CCTC | 4 cut(s) | 91, 118, 320, 323 |
| MseI | TTAA | 2 cut(s) | 240, 341 |
| MunI | CAATTG | 1 cut(s) | 393 |
| MvnI | CGCG | 2 cut(s) | 362, 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NdeII | GATC | 3 cut(s) | 100, 253, 357 |
| NlaIII | CATG | 2 cut(s) | 176, 276 |
| NlaIV | GGNNCC | 1 cut(s) | 102 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PfeI | GAWTC | 2 cut(s) | 167, 176 |
| PflFI | GACNNNGTC | 1 cut(s) | 300 |
| PleI | GAGTC | 1 cut(s) | 272 |
| PpsI | GAGTC | 1 cut(s) | 272 |
| PshBI | ATTAAT | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 1 cut(s) | 102 |
| PspPI | GGNCC | 1 cut(s) | 83 |
| PsuI | RGATCY | 1 cut(s) | 100 |
| PsyI | GACNNNGTC | 1 cut(s) | 300 |
| RsaI | GTAC | 2 cut(s) | 289, 417 |
| RsaNI | GTAC | 2 cut(s) | 288, 416 |
| SaqAI | TTAA | 2 cut(s) | 240, 341 |
| Sau3AI | GATC | 3 cut(s) | 100, 253, 357 |
| Sau96I | GGNCC | 1 cut(s) | 83 |
| SchI | GAGTC | 1 cut(s) | 272 |
| SetI | ASST | 1 cut(s) | 206 |
| SfaNI | GCATC | 1 cut(s) | 221 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SinI | GGWCC | 1 cut(s) | 83 |
| Sse9I | AATT | 4 cut(s) | 7, 217, 241, 393 |
| TaaI | ACNGT | 5 cut(s) | 121, 143, 195, 269, 349 |
| TasI | AATT | 4 cut(s) | 7, 217, 241, 393 |
| TatI | WGTACW | 2 cut(s) | 287, 415 |
| TfiI | GAWTC | 2 cut(s) | 167, 176 |
| Tru1I | TTAA | 2 cut(s) | 240, 341 |
| Tru9I | TTAA | 2 cut(s) | 240, 341 |
| TscAI | CASTG | 3 cut(s) | 148, 254, 354 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 4 cut(s) | 17, 101, 147, 261 |
| TspRI | CASTG | 3 cut(s) | 148, 254, 354 |
| Tth111I | GACNNNGTC | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 1 cut(s) | 83 |
| VspI | ATTAAT | 1 cut(s) | 240 |