Rh6BG240900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
44834367 .. 44855323
20957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG240900.1

Sequence Viewer

Length: 228 bp
ATGGAATTAACAGATGCACTATCACATGATTCCTTATACCACTCACAGTTCAGAACCTATATGGCATCAAATTATCTTGGAACATATCGTATTAATTACCAGTACACGAGTGACACTGTTTCATATATACCAATTTTCTATGGGAATCACTGCCTATCCTCCAGATTGAAGATTAAACGTGCCATAAATTCAATAACCCATCAATTAGACTTGAGATTGATCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.82

Weight (kDa)

8.82

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020664)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017608
rosa_multiflora Rmu_sc0000147.1_g000061
rosa_roxburghii Rroxscaffold_7G00213870
rosa_samantha Rh2AG050500 Rh5AG329400 Rh6BG240900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 169, 192
AlwI GGATC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 93
BauI CACGAG 1 cut(s) 106
BccI CCATC 1 cut(s) 207
BmsI GCATC 2 cut(s) 4, 74
BpmI CTGGAG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 100
Bsp143I GATC 1 cut(s) 219
BspPI GGATC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 48, 118
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 114, 148
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 26
CviQI GTAC 1 cut(s) 103
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
FaeI CATG 1 cut(s) 29
FatI CATG 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 145
Hin1II CATG 1 cut(s) 29
HinfI GANTC 2 cut(s) 29, 145
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 48, 118
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 2 cut(s) 113, 175
LweI GCATC 2 cut(s) 4, 74
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 181
MluCI AATT 6 cut(s) 5, 70, 94, 132, 187, 203
MnlI CCTC 1 cut(s) 169
MseI TTAA 3 cut(s) 8, 93, 174
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 29, 145
PshBI ATTAAT 1 cut(s) 93
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 8, 93, 174
Sau3AI GATC 1 cut(s) 219
SetI ASST 2 cut(s) 59, 181
SfaNI GCATC 2 cut(s) 4, 74
SgeI CNNG 8 cut(s) 38, 89, 112, 118, 120, 174, 191, 223
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 6 cut(s) 5, 70, 94, 132, 187, 203
TaaI ACNGT 2 cut(s) 48, 118
TaiI ACGT 1 cut(s) 181
TasI AATT 6 cut(s) 5, 70, 94, 132, 187, 203
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 2 cut(s) 29, 145
Tru1I TTAA 3 cut(s) 8, 93, 174
Tru9I TTAA 3 cut(s) 8, 93, 174
TscAI CASTG 2 cut(s) 121, 155
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 121, 155
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.