Rroxscaffold_7G00213870

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
64317050 .. 64319014
1965 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00213870.1

Sequence Viewer

Length: 240 bp
ATGAGTAGAAATGCATATGAGTTCAAAAAAGTATCCCGATCTGAAGTAGACATTGAGACCTTTCAGCTCTTGCTCAAGCATGAAAAACTTTCCTGCATCAGCCCAGAAGAATATGGTTCATGTGACTCAGGCTATAGTGGTGGACTGACGACCAATGCCTTTGAATACGCACTCAAGGCTGGTGGTTTGGAGCCAGAGATCGACTTCCTTATACTGGGACTCGTCGCAACACCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.65

Weight (kDa)

4.67

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020664)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017608
rosa_multiflora Rmu_sc0000147.1_g000061
rosa_roxburghii Rroxscaffold_7G00213870
rosa_samantha Rh2AG050500 Rh5AG329400 Rh6BG240900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 25, 164
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 133
BfuI GTATCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 59, 158
BsaI GGTCTC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 38, 198
BspCNI CTCAG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 219
BssMI GATC 2 cut(s) 38, 198
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 127
BstKTI GATC 2 cut(s) 41, 201
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 38, 198
BstMWI GCNNNNNNNGC 2 cut(s) 176, 233
BstSFI CTRYAG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 2 cut(s) 80, 120
CviJI RGCY 5 cut(s) 67, 102, 132, 179, 193
CviKI_1 RGCY 5 cut(s) 67, 102, 132, 179, 193
DdeI CTNAG 1 cut(s) 127
DpnI GATC 2 cut(s) 40, 200
DpnII GATC 2 cut(s) 38, 198
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 2 cut(s) 83, 123
FaiI YATR 8 cut(s) 16, 18, 81, 114, 121, 135, 212, 238
FaqI GGGAC 1 cut(s) 231
FatI CATG 2 cut(s) 79, 119
FauNDI CATATG 1 cut(s) 16
FblI GTMKAC 1 cut(s) 48
Hin1II CATG 2 cut(s) 83, 123
HinfI GANTC 2 cut(s) 125, 219
Hpy166II GTNNAC 2 cut(s) 49, 143
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 2 cut(s) 49, 143
Hpy99I CGWCG 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 14, 96, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 233
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 2 cut(s) 83, 123
Kzo9I GATC 2 cut(s) 38, 198
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 106, 114, 117, 165, 200, 207
LweI GCATC 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 40, 200
MboI GATC 2 cut(s) 38, 198
MboII GAAGA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 119, 213
Mph1103I ATGCAT 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 176, 233
NdeI CATATG 1 cut(s) 16
NdeII GATC 2 cut(s) 38, 198
NlaIII CATG 2 cut(s) 83, 123
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 16
PleI GAGTC 2 cut(s) 119, 213
PpsI GAGTC 2 cut(s) 119, 213
PspN4I GGNNCC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 38, 198
SchI GAGTC 2 cut(s) 119, 213
SetI ASST 3 cut(s) 62, 69, 235
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 74, 173
SmoI CTYRAG 2 cut(s) 74, 173
TaqI TCGA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 96, 108
XmiI GTMKAC 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.