RLG00000017851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020665
Physical Location & Seq
Reverse (-)
22239888 .. 22240448
561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017851

Sequence Viewer

Length: 426 bp
ATGCAGCAAATGCAGCAAATTCAGCAAATGCAGCAAATTGCCCAATCCAAGAATGTGCCATTTCCGCAACAGCAGCAGAGAGAAAGAATGCGAAGACGTCAACCATCTACTCCTCGTGCTGGTATGGACATCGTACAGGACAGACCAATGGTCCAGGTCAAGATCGAAGCTCCATCAGAGTTACCCATGGATAGTAATGCCTTCAAAAATTTCAATAACAGACATCCCCAATTGCAGTTCAGACAGCAGCAAATTCCTGCAATGTCGAATCCTACAATGCAAAATGTCCCTGCTCAGTCAGGGAATCAGAACGCCGGTGTCCTTAGGGCTCGACCAGTGAAGGTTGAAGGTTTCCAGGAATTAATGGGGGGAGATGCTTCATCAAAGCATGATTCAGACGAAATTAGGCTGACCTCCCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

10.52

Isoelectric Point (pI)

74.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020665)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017851
rosa_multiflora Rmu_sc0003994.1_g000018
rosa_rugosa Rorug02G0170100
rosa_samantha Rh2AG222100 Rh2BG233000 Rh2DG229700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
AciI CCGC 1 cut(s) 65
AcsI RAATTY 3 cut(s) 18, 208, 252
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 205, 214, 347
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 2 cut(s) 153, 354
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
ApeKI GCWGC 5 cut(s) 4, 13, 31, 73, 247
ApoI RAATTY 3 cut(s) 18, 208, 252
AseI ATTAAT 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 323
BanII GRGCYC 1 cut(s) 331
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 5 cut(s) 16, 25, 43, 85, 259
BccI CCATC 2 cut(s) 112, 181
BciT130I CCWGG 2 cut(s) 155, 356
BisI GCNGC 5 cut(s) 5, 14, 32, 74, 248
BlsI GCNGC 5 cut(s) 6, 15, 33, 75, 249
Bme1390I CCNGG 2 cut(s) 155, 356
Bme18I GGWCC 1 cut(s) 151
BmeRI GACNNNNNGTC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 155, 356
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 155, 356
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 5 cut(s) 16, 25, 43, 85, 259
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 97
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 155, 356
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 294, 323
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 64, 73
BstNI CCWGG 2 cut(s) 155, 356
BstSCI CCNGG 2 cut(s) 153, 354
BstV1I GCAGC 5 cut(s) 16, 25, 43, 85, 259
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 187, 389
CviJI RGCY 3 cut(s) 170, 329, 409
CviKI_1 RGCY 3 cut(s) 170, 329, 409
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 294, 323
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DriI GACNNNNNGTC 1 cut(s) 149
Eam1105I GACNNNNNGTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 153, 354
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 190, 392
FaiI YATR 3 cut(s) 125, 188, 390
FaqI GGGAC 1 cut(s) 272
FatI CATG 2 cut(s) 186, 388
Fnu4HI GCNGC 5 cut(s) 5, 14, 32, 74, 248
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 5, 14, 32, 74, 248
GluI GCNGC 5 cut(s) 5, 14, 32, 74, 248
HapII CCGG 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 2 cut(s) 190, 392
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 3 cut(s) 268, 304, 392
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 178, 242, 309, 397
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 211, 334, 341
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 4, 13, 31, 235, 260, 280
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 64, 73
HpyF3I CTNAG 2 cut(s) 294, 323
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 2 cut(s) 190, 392
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 5 cut(s) 16, 25, 43, 85, 259
LweI GCATC 1 cut(s) 364
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 105
MfeI CAATTG 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 7 cut(s) 18, 36, 208, 230, 252, 359, 402
MnlI CCTC 2 cut(s) 123, 424
MseI TTAA 1 cut(s) 362
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 155, 356
MunI CAATTG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 2 cut(s) 155, 356
MwoI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 64, 73
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 190, 392
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 268, 304, 392
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 5 cut(s) 6, 15, 33, 75, 249
PshBI ATTAAT 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 153, 354
PspGI CCWGG 2 cut(s) 153, 354
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 5 cut(s) 5, 14, 32, 74, 248
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 155, 356
SduI GDGCHC 1 cut(s) 331
SetI ASST 6 cut(s) 100, 159, 172, 345, 352, 416
SfaNI GCATC 1 cut(s) 364
SgrAI CRCCGGYG 1 cut(s) 314
SinI GGWCC 1 cut(s) 151
Sse9I AATT 7 cut(s) 18, 36, 208, 230, 252, 359, 402
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 153, 354
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 165, 266, 331
TasI AATT 7 cut(s) 18, 36, 208, 230, 252, 359, 402
TfiI GAWTC 3 cut(s) 268, 304, 392
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 342
TseI GCWGC 5 cut(s) 4, 13, 31, 73, 247
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 3 cut(s) 18, 208, 252
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.