Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020665

Physical Location & Seq

Genomic Coordinates Reverse (-)

22753726 .. 22757127

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCATCCACAGATGCAGCAGATTCAGCAAATGCAGCAAATTGCCCAATCCAAGAATGTGCCATTTCAGCAACAGCAGCAGATAGAAAGAATGCGAAGACGTCAACCATATACTCCTCATGCTGGTATGGACATGGGACAGGATAGACCAATGGTCCAGGTCAAGATTGAAGCTCCATCAGAGTTACCCATGGATAGTAATGCCTTCAACAATTTCAATAACAGACATCCCCAATTGCAGTTCAGACAGCAGCAAATTCCTGCAATGTCGAATCCTACAATGCAAAATGTCCCTGCTCTGTCAGGGAATAAGTTTGGACATATGTCTTCTTCACAAATTGCACAAATTCAATCACAGAACGCCGGTGTTCTTTGGGCTCGACCAATGAAGGTTGAAGGTTTCCAGGAATTAATGGGGGGAGATGCTTCATCAAAGCATGATTCAGACGAAATTAGGCTGACCTCCCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromo_TP

Protein Analysis

157

Amino Acids

17.93

Weight (kDa)

9.59

Isoelectric Point (pI)

80.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020665)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017851
rosa_multiflora	Rmu_sc0003994.1_g000018
rosa_rugosa	Rorug02G0170100
rosa_samantha	Rh2AG222100 Rh2BG233000 Rh2DG229700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	255, 345
AcyI	GRCGYC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	170, 208, 217, 350, 395
AhdI	GACNNNNNGTC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	156, 402
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
ApeKI	GCWGC	4 cut(s)	16, 34, 76, 250
ApoI	RAATTY	2 cut(s)	255, 345
AseI	ATTAAT	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	103, 318
BbvI	GCAGC	4 cut(s)	28, 46, 88, 262
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	158, 404
BisI	GCNGC	4 cut(s)	17, 35, 77, 251
BlsI	GCNGC	4 cut(s)	18, 36, 78, 252
Bme1390I	CCNGG	2 cut(s)	158, 404
Bme18I	GGWCC	1 cut(s)	154
BmeRI	GACNNNNNGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	158, 404
BmsI	GCATC	3 cut(s)	3, 13, 412
BoxI	GACNNNNGTC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	103, 318
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	158, 404
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	4, 226
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	28, 46, 88, 262
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	2 cut(s)	150, 275
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	150, 275
BsmI	GAATGC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	158, 404
BstACI	GRCGYC	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	4, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 67, 76
BstNI	CCWGG	2 cut(s)	158, 404
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	156, 402
BstV1I	GCAGC	4 cut(s)	28, 46, 88, 262
BstV2I	GAAGAC	2 cut(s)	103, 318
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	4, 226
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	4 cut(s)	119, 133, 190, 437
CviJI	RGCY	3 cut(s)	173, 377, 457
CviKI_1	RGCY	3 cut(s)	173, 377, 457
DriI	GACNNNNNGTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	156, 402
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	122, 136, 193, 440
FaiI	YATR	9 cut(s)	109, 111, 120, 128, 134, 191, 321, 323, 438
FaqI	GGGAC	2 cut(s)	150, 275
FatI	CATG	4 cut(s)	118, 132, 189, 436
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	17, 35, 77, 251
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	4 cut(s)	17, 35, 77, 251
GluI	GCNGC	4 cut(s)	17, 35, 77, 251
HapII	CCGG	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	122, 136, 193, 440
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	22, 271, 440
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	181, 245, 445
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	214, 382, 389
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	7 cut(s)	4, 16, 34, 238, 263, 283, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 67, 76
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	122, 136, 193, 440
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	4 cut(s)	28, 46, 88, 262
LweI	GCATC	3 cut(s)	3, 13, 412
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	3 cut(s)	108, 318, 321
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	8 cut(s)	39, 211, 233, 255, 336, 345, 407, 450
MnlI	CCTC	2 cut(s)	126, 472
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	410
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	158, 404
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	158, 404
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 67, 76
NcoI	CCATGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	321
NlaIII	CATG	4 cut(s)	122, 136, 193, 440
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	22, 271, 440
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	18, 36, 78, 252
PshAI	GACNNNNGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	156, 402
PspGI	CCWGG	2 cut(s)	156, 402
PspPI	GGNCC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	4 cut(s)	17, 35, 77, 251
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	158, 404
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	103, 162, 175, 393, 400, 464
SfaNI	GCATC	3 cut(s)	3, 13, 412
SgrAI	CRCCGGYG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	8 cut(s)	39, 211, 233, 255, 336, 345, 407, 450
StyD4I	CCNGG	2 cut(s)	156, 402
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	269, 379
TasI	AATT	8 cut(s)	39, 211, 233, 255, 336, 345, 407, 450
TfiI	GAWTC	3 cut(s)	22, 271, 440
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	4 cut(s)	16, 34, 76, 250
TspDTI	ATGAA	2 cut(s)	401, 417
VpaK11BI	GGWCC	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	410
XapI	RAATTY	2 cut(s)	255, 345
ZraI	GACGTC	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.