Rmu_sc0003994.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003994.1
OG0020665
Physical Location & Seq
Forward (+)
112919 .. 113488
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003994.1_g000018.1.cds

Sequence Viewer

Length: 480 bp
atgcagcaaatgcagcagattcagcaaatgcagcaaattgaattgcccaatccaagaatatatgtgccatttaagcaacagcagcagatagaaagaatgcgaagacgtcaaccatatactcctcgtgctggtatggacatggtacaggacagaccaatggttcaggtcaagattgaagctccatcagagttacccatggatagtaatgccttcagcaatttcaataacagacatccccaattgcagttcagacagcagcaaattcctgcaatgttgaatcctacaatgcaaaatgtccctgctctgtcaggtaataagtttggacatatgtcttcttcaaaaattgcacaaattcaatcacagaacgccggtgttctttgggctcgaccaatgaaggttgaaggtttccaggaattaatggggggagatgcttcatcaaagcatgattcagacgaaattaggctgacctccccaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

159

Amino Acids

18.33

Weight (kDa)

9.89

Isoelectric Point (pI)

70.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020665)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017851
rosa_multiflora Rmu_sc0003994.1_g000018
rosa_rugosa Rorug02G0170100
rosa_samantha Rh2AG222100 Rh2BG233000 Rh2DG229700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 109
AcsI RAATTY 2 cut(s) 261, 351
AcuI CTGAAG 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 7 cut(s) 41, 176, 223, 277, 339, 356, 401
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
ApeKI GCWGC 5 cut(s) 4, 13, 31, 82, 256
ApoI RAATTY 2 cut(s) 261, 351
AseI ATTAAT 1 cut(s) 416
BanII GRGCYC 1 cut(s) 385
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 109, 324
BbvI GCAGC 5 cut(s) 16, 25, 43, 94, 268
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 410
BisI GCNGC 5 cut(s) 5, 14, 32, 83, 257
BlsI GCNGC 5 cut(s) 6, 15, 33, 84, 258
Bme1390I CCNGG 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 418
BoxI GACNNNNGTC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 109, 324
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 5 cut(s) 16, 25, 43, 94, 268
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 232
BstMWI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 73, 82
BstNI CCWGG 1 cut(s) 410
BstPAI GACNNNNGTC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 408
BstV1I GCAGC 5 cut(s) 16, 25, 43, 94, 268
BstV2I GAAGAC 2 cut(s) 109, 324
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 368
Csp6I GTAC 1 cut(s) 143
CviAII CATG 3 cut(s) 139, 196, 443
CviJI RGCY 3 cut(s) 179, 383, 463
CviKI_1 RGCY 3 cut(s) 179, 383, 463
CviQI GTAC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 142, 199, 446
FaqI GGGAC 1 cut(s) 281
FatI CATG 3 cut(s) 138, 195, 442
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 5 cut(s) 5, 14, 32, 83, 257
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 5 cut(s) 5, 14, 32, 83, 257
GluI GCNGC 5 cut(s) 5, 14, 32, 83, 257
HapII CCGG 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 3 cut(s) 142, 199, 446
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 3 cut(s) 19, 277, 446
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 187, 251, 451
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 220, 388, 395
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 7 cut(s) 4, 13, 31, 244, 269, 289, 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 73, 82
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 142, 199, 446
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 9 cut(s) 114, 131, 149, 279, 294, 312, 382, 395, 422
Lsp1109I GCAGC 5 cut(s) 16, 25, 43, 94, 268
LweI GCATC 1 cut(s) 418
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 189
MboII GAAGA 3 cut(s) 114, 324, 327
MfeI CAATTG 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 9 cut(s) 36, 41, 217, 239, 261, 342, 351, 413, 456
MnlI CCTC 2 cut(s) 132, 478
MseI TTAA 2 cut(s) 72, 416
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 6 cut(s) 10, 13, 22, 31, 73, 82
NcoI CCATGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 327
NlaIII CATG 3 cut(s) 142, 199, 446
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 19, 277, 446
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 5 cut(s) 6, 15, 33, 84, 258
PshAI GACNNNNGTC 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 72, 416
SatI GCNGC 5 cut(s) 5, 14, 32, 83, 257
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 385
SetI ASST 7 cut(s) 109, 168, 181, 313, 399, 406, 470
SfaNI GCATC 1 cut(s) 418
SgrAI CRCCGGYG 1 cut(s) 368
Sse9I AATT 9 cut(s) 36, 41, 217, 239, 261, 342, 351, 413, 456
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 385
TasI AATT 9 cut(s) 36, 41, 217, 239, 261, 342, 351, 413, 456
TfiI GAWTC 3 cut(s) 19, 277, 446
Tru1I TTAA 2 cut(s) 72, 416
Tru9I TTAA 2 cut(s) 72, 416
TseI GCWGC 5 cut(s) 4, 13, 31, 82, 256
TspDTI ATGAA 2 cut(s) 407, 423
VspI ATTAAT 1 cut(s) 416
XapI RAATTY 2 cut(s) 261, 351
ZraI GACGTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.