Rh2AG222100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020665
Physical Location & Seq
Reverse (-)
23448099 .. 23453986
5888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG222100.1

Sequence Viewer

Length: 585 bp
ATGCATCCACAGATGCAGCAGATTCAGCAAATGCAGCAAATTGCCCAATCCAAGAATGTGCCATTTCAACAGCAGCAGATAGAAATGCGAAGACGTGAACCATCTACTCCTCGTGTTGGTATGGACATGGTAAGGACAGACCAATGGTCCAGGTCAAGATTGAAGCTCCATCAGAGTTACCCATGGATAGTAATATTGCCGTCAACAATTTCAATAACAGACATCCCCAATTGCAGTTCAGACAGCAGCAAATTCCTGCAATGTCGAATCCTACAATGCAAAATATCCCTGCTCAGTCAGGGAATCAGTTTAGACAGATGTCTTCTTCCCAAATTGCACAAATTCAATCACAAAAGAGAGATTGCAGCTAGCCCAGATCCAACTTCAAAACGTCGCGAAAATGCCAATCCAAGCATCACTATCCCAGCCACCCAACAGATCCAGCCTAACACAGGCAGGATCTCCAACAAAACAGCGATCACAGAGGTGAATCAACCAAAAAGAAGCGCATACACCGACGATATCATCAACCACCCCGAGAATCCGAGATGGGACAGAAGAGTTATACTATTTATTACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

194

Amino Acids

22.49

Weight (kDa)

10.15

Isoelectric Point (pI)

74.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020665)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017851
rosa_multiflora Rmu_sc0003994.1_g000018
rosa_rugosa Rorug02G0170100
rosa_samantha Rh2AG222100 Rh2BG233000 Rh2DG229700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AclWI GGATC 3 cut(s) 371, 433, 467
AcsI RAATTY 2 cut(s) 251, 341
AfiI CCNNNNNNNGG 2 cut(s) 116, 452
AgsI TTSAA 5 cut(s) 68, 163, 213, 346, 387
AhdI GACNNNNNGTC 1 cut(s) 145
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 149
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 2 cut(s) 166, 368
AluI AGCT 2 cut(s) 166, 368
AlwI GGATC 3 cut(s) 371, 433, 467
Ama87I CYCGRG 1 cut(s) 536
ApeKI GCWGC 5 cut(s) 16, 34, 73, 246, 365
ApoI RAATTY 2 cut(s) 251, 341
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 499
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 1 cut(s) 147
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 97, 314
BbvI GCAGC 5 cut(s) 28, 46, 85, 258, 377
BccI CCATC 3 cut(s) 109, 177, 543
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 1 cut(s) 369
BisI GCNGC 5 cut(s) 17, 35, 74, 247, 366
BlsI GCNGC 5 cut(s) 18, 36, 75, 248, 367
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 147
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 536
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 3 cut(s) 3, 13, 423
BmtI GCTAGC 1 cut(s) 372
BoxI GACNNNNGTC 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 97, 314
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 452
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 4, 222
BseLI CCNNNNNNNGG 2 cut(s) 116, 452
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 5 cut(s) 28, 46, 85, 258, 377
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 116, 452
BsmFI GGGAC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 536
Bsp143I GATC 4 cut(s) 376, 438, 459, 477
Bsp19I CCATGG 1 cut(s) 182
Bsp68I TCGCGA 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 396
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 3 cut(s) 371, 433, 467
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 4 cut(s) 376, 438, 459, 477
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 4, 222
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 4 cut(s) 379, 441, 462, 480
BstMBI GATC 4 cut(s) 376, 438, 459, 477
BstMWI GCNNNNNNNGC 2 cut(s) 25, 34
BstNI CCWGG 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 5 cut(s) 28, 46, 85, 258, 377
BstV2I GAAGAC 2 cut(s) 97, 314
BstX2I RGATCY 3 cut(s) 376, 438, 459
BstYI RGATCY 3 cut(s) 376, 438, 459
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 4, 222
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 2 cut(s) 127, 183
CviJI RGCY 5 cut(s) 166, 368, 372, 428, 445
CviKI_1 RGCY 5 cut(s) 166, 368, 372, 428, 445
DdeI CTNAG 1 cut(s) 293
DpnI GATC 4 cut(s) 378, 440, 461, 479
DpnII GATC 4 cut(s) 376, 438, 459, 477
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 553
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 182
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 130, 186
FaiI YATR 5 cut(s) 122, 128, 184, 511, 566
FaqI GGGAC 1 cut(s) 566
FatI CATG 2 cut(s) 126, 182
Fnu4HI GCNGC 5 cut(s) 17, 35, 74, 247, 366
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 17, 35, 74, 247, 366
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 508
GluI GCNGC 5 cut(s) 17, 35, 74, 247, 366
GsaI CCCAGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 509
Hin1II CATG 2 cut(s) 130, 186
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 5 cut(s) 22, 267, 303, 490, 541
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 2 cut(s) 98, 204
Hpy188I TCNGA 3 cut(s) 174, 241, 546
Hpy188III TCNNGA 2 cut(s) 156, 395
Hpy8I GTNNAC 2 cut(s) 98, 204
Hpy99I CGWCG 2 cut(s) 396, 521
HpyCH4IV ACGT 2 cut(s) 94, 391
HpyCH4V TGCA 8 cut(s) 4, 16, 34, 234, 259, 279, 337, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 34
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 2 cut(s) 94, 391
Hsp92II CATG 2 cut(s) 130, 186
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 4 cut(s) 376, 438, 459, 477
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 5 cut(s) 28, 46, 85, 258, 377
LweI GCATC 3 cut(s) 3, 13, 423
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 94, 391
MaeIII GTNAC 1 cut(s) 176
MalI GATC 4 cut(s) 378, 440, 461, 479
MboI GATC 4 cut(s) 376, 438, 459, 477
MboII GAAGA 4 cut(s) 102, 314, 317, 570
MfeI CAATTG 1 cut(s) 229
MflI RGATCY 3 cut(s) 376, 438, 459
MluCI AATT 6 cut(s) 39, 207, 229, 251, 332, 341
MmeI TCCRAC 2 cut(s) 404, 489
MnlI CCTC 2 cut(s) 120, 478
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 25, 34
NcoI CCATGG 1 cut(s) 182
NdeII GATC 4 cut(s) 376, 438, 459, 477
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 2 cut(s) 130, 186
NruI TCGCGA 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 485
PfeI GAWTC 5 cut(s) 22, 267, 303, 490, 541
PkrI GCNGC 5 cut(s) 18, 36, 75, 248, 367
PshAI GACNNNNGTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 3 cut(s) 376, 438, 459
RruI TCGCGA 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 485
SatI GCNGC 5 cut(s) 17, 35, 74, 247, 366
Sau3AI GATC 4 cut(s) 376, 438, 459, 477
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 151
SetI ASST 6 cut(s) 97, 155, 168, 370, 394, 489
SfaNI GCATC 3 cut(s) 3, 13, 423
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 6 cut(s) 39, 207, 229, 251, 332, 341
SspI AATATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 182
TaiI ACGT 2 cut(s) 97, 394
TaqI TCGA 1 cut(s) 265
TasI AATT 6 cut(s) 39, 207, 229, 251, 332, 341
TfiI GAWTC 5 cut(s) 22, 267, 303, 490, 541
TseI GCWGC 5 cut(s) 16, 34, 73, 246, 365
VpaK11BI GGWCC 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 450
XapI RAATTY 2 cut(s) 251, 341
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.