Rh2BG233000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020665
Physical Location & Seq
Reverse (-)
23107936 .. 23108499
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG233000.1

Sequence Viewer

Length: 474 bp
ATGCATCCACAGATGCAGCAAATGCAGCAGATTCAGCAAATGCAGCAAATTGCCCAATCCAAGAATGTGCCATTTCAGCAACAGCAGCAGATAGAAAGAATGCGAAGACGTCAACCATATACTCCTCGTGCTGGTATGGACATGGTACAGGACAGACCAATGGTCCAGGTCAAGATTGAAGCTCCATCAGAGTTACCCATGGATAGTAATGCCTTCAACAATTTCAATAACAGACATCCCCAATTGCAGTTCAGACAGCAGCAAATTCCTGCAATGTTGAATCCTACAATGCAAAATGTCCCTGCTCTGTCAGGGAATAAGTTTGGACATATGTCTTCTTCACAAATTGCACAAATTCAATCACAGAACGCCGGTGTTCTTAGGGCTCGACCAATGAAGGTTGAAGGTTTCCAGGAATTAATGGGGGGAGATGCTTCATCAAAGCATGATTCAGACGAAATTAGGCTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromo_TP

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

9.97

Isoelectric Point (pI)

76.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020665)

Species Orthologous Gene IDs
rosa_laevigata RLG00000017851
rosa_multiflora Rmu_sc0003994.1_g000018
rosa_rugosa Rorug02G0170100
rosa_samantha Rh2AG222100 Rh2BG233000 Rh2DG229700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 112
AcsI RAATTY 2 cut(s) 264, 354
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 6 cut(s) 179, 217, 226, 280, 359, 404
AhdI GACNNNNNGTC 1 cut(s) 161
AjnI CCWGG 2 cut(s) 165, 411
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
ApeKI GCWGC 5 cut(s) 16, 25, 43, 85, 259
ApoI RAATTY 2 cut(s) 264, 354
AseI ATTAAT 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 112, 327
BbvI GCAGC 5 cut(s) 28, 37, 55, 97, 271
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 167, 413
BfaI CTAG 1 cut(s) 472
BisI GCNGC 5 cut(s) 17, 26, 44, 86, 260
BlsI GCNGC 5 cut(s) 18, 27, 45, 87, 261
Bme1390I CCNGG 2 cut(s) 167, 413
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 167, 413
BmsI GCATC 3 cut(s) 3, 13, 421
BoxI GACNNNNGTC 1 cut(s) 331
BpiI GAAGAC 2 cut(s) 112, 327
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 167, 413
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 4, 235
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 5 cut(s) 28, 37, 55, 97, 271
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 388
Bsp19I CCATGG 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 109
BssSI CACGAG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 167, 413
BstACI GRCGYC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 380
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 4, 235
BstMWI GCNNNNNNNGC 6 cut(s) 22, 25, 34, 43, 76, 85
BstNI CCWGG 2 cut(s) 167, 413
BstPAI GACNNNNGTC 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 165, 411
BstV1I GCAGC 5 cut(s) 28, 37, 55, 97, 271
BstV2I GAAGAC 2 cut(s) 112, 327
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 4, 235
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 142, 199, 446
CviJI RGCY 3 cut(s) 182, 386, 466
CviKI_1 RGCY 3 cut(s) 182, 386, 466
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 165, 411
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 145, 202, 449
FaiI YATR 8 cut(s) 118, 120, 137, 143, 200, 330, 332, 447
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 141, 198, 445
FauNDI CATATG 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 17, 26, 44, 86, 260
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 5 cut(s) 17, 26, 44, 86, 260
FspBI CTAG 1 cut(s) 472
GluI GCNGC 5 cut(s) 17, 26, 44, 86, 260
HapII CCGG 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 3 cut(s) 145, 202, 449
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 3 cut(s) 31, 280, 449
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 190, 254, 454
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 223, 391, 398
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 8 cut(s) 4, 16, 25, 43, 247, 272, 292, 350
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 25, 34, 43, 76, 85
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 3 cut(s) 145, 202, 449
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 28, 37, 55, 97, 271
LweI GCATC 3 cut(s) 3, 13, 421
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 192
MboII GAAGA 3 cut(s) 117, 327, 330
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 8 cut(s) 48, 220, 242, 264, 345, 354, 416, 459
MnlI CCTC 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 419
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 167, 413
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 2 cut(s) 167, 413
MwoI GCNNNNNNNGC 6 cut(s) 22, 25, 34, 43, 76, 85
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 330
NlaIII CATG 3 cut(s) 145, 202, 449
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 31, 280, 449
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 5 cut(s) 18, 27, 45, 87, 261
PshAI GACNNNNGTC 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 165, 411
PspGI CCWGG 2 cut(s) 165, 411
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 5 cut(s) 17, 26, 44, 86, 260
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 167, 413
SduI GDGCHC 1 cut(s) 388
SetI ASST 6 cut(s) 112, 171, 184, 402, 409, 473
SfaNI GCATC 3 cut(s) 3, 13, 421
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 1 cut(s) 163
Sse9I AATT 8 cut(s) 48, 220, 242, 264, 345, 354, 416, 459
SspMI CTAG 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 165, 411
StyI CCWWGG 1 cut(s) 198
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 388
TasI AATT 8 cut(s) 48, 220, 242, 264, 345, 354, 416, 459
TfiI GAWTC 3 cut(s) 31, 280, 449
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TseI GCWGC 5 cut(s) 16, 25, 43, 85, 259
TspDTI ATGAA 2 cut(s) 410, 426
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 419
XapI RAATTY 2 cut(s) 264, 354
XspI CTAG 1 cut(s) 472
ZraI GACGTC 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.