RLG00000018126

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019482
Physical Location & Seq
Reverse (-)
25576786 .. 25578426
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018126

Sequence Viewer

Length: 753 bp
ATGCAGCTGGGTAATCCTGAAACCTCAGATGCTAAGGATTGGAGAGGTATAGTAGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTAATACGCGAAAACTGTGATTTTGATAGTGATACTTGGAGTAAGAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAATCTGCATCGGTGATACAACAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCATACATCTACAATGGTGCCAAGGATTATGGGTGGCTATGATCCTTGTCTGGATGAGTATTCAAGAAAATTCTATAATAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTTTTCCTATATACAAGAAACTCATTGCAGCAGGAAGCAGGAACGAGAATATGGGTGTACATCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGAGGAGCCGGCATGGAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTTTGACATATTACTTGAAGGAGCTGAAACTCTTGCCTTTTCTCTACTTGATGAAGCAGCTAAAGGGTTCTCAATTTAG

Protein Analysis

251

Amino Acids

28.16

Weight (kDa)

5.74

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 168 6.2e-25 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 574
AccB1I GGYRCC 2 cut(s) 295, 574
AccII CGCG 1 cut(s) 108
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 4 cut(s) 174, 427, 525, 576
AgsI TTSAA 5 cut(s) 246, 342, 456, 617, 692
AluBI AGCT 5 cut(s) 7, 161, 403, 698, 734
AluI AGCT 5 cut(s) 7, 161, 403, 698, 734
Alw21I GWGCWC 2 cut(s) 157, 539
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 4, 494, 731
ApoI RAATTY 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 574
AspS9I GGNCC 2 cut(s) 376, 395
AsuHPI GGTGA 2 cut(s) 242, 635
AvaII GGWCC 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 2 cut(s) 295, 574
Bbv12I GWGCWC 2 cut(s) 157, 539
BbvI GCAGC 3 cut(s) 16, 506, 743
BccI CCATC 2 cut(s) 245, 469
BfmI CTRYAG 1 cut(s) 421
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 5, 495, 732
BlsI GCNGC 3 cut(s) 6, 496, 733
BmcAI AGTACT 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 376, 395
BmiI GGNNCC 4 cut(s) 297, 397, 576, 594
BmsI GCATC 4 cut(s) 19, 234, 249, 426
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 141, 389
BsaJI CCNNGG 3 cut(s) 299, 570, 656
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 416, 637
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 299, 570, 656
BseGI GGATG 2 cut(s) 172, 337
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 416, 637
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 3 cut(s) 16, 506, 743
BseYI CCCAGC 2 cut(s) 7, 399
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 2 cut(s) 295, 574
BsiHKAI GWGCWC 2 cut(s) 157, 539
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 2 cut(s) 381, 556
BsmFI GGGAC 2 cut(s) 381, 556
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 157, 539
Bsp1407I TGTACA 1 cut(s) 523
Bsp143I GATC 2 cut(s) 147, 319
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 297, 397, 576, 594
BspMAI CTGCAG 1 cut(s) 425
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 2 cut(s) 295, 574
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 523
BsrI ACTGG 2 cut(s) 416, 637
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 299, 570, 656
BssMI GATC 2 cut(s) 147, 319
BssT1I CCWWGG 2 cut(s) 299, 656
Bst4CI ACNGT 2 cut(s) 116, 571
BstAUI TGTACA 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 25, 33
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 172, 337
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 2 cut(s) 150, 322
BstMBI GATC 2 cut(s) 147, 319
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 16, 506, 743
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 2 cut(s) 172, 337
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 1 cut(s) 597
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 376, 395
Csp6I GTAC 4 cut(s) 173, 426, 524, 575
CviAII CATG 5 cut(s) 71, 383, 440, 562, 600
CviQI GTAC 4 cut(s) 173, 426, 524, 575
DdeI CTNAG 2 cut(s) 25, 33
DpnI GATC 2 cut(s) 149, 321
DpnII GATC 2 cut(s) 147, 319
Eco130I CCWWGG 2 cut(s) 299, 656
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 376
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 299, 656
ErhI CCWWGG 2 cut(s) 299, 656
FaeI CATG 5 cut(s) 74, 386, 443, 565, 603
FaqI GGGAC 2 cut(s) 381, 556
FatI CATG 5 cut(s) 70, 382, 439, 561, 599
Fnu4HI GCNGC 3 cut(s) 5, 495, 732
FokI GGATG 2 cut(s) 179, 344
Fsp4HI GCNGC 3 cut(s) 5, 495, 732
GluI GCNGC 3 cut(s) 5, 495, 732
GsaI CCCAGC 2 cut(s) 11, 403
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 596
Hin1II CATG 5 cut(s) 74, 386, 443, 565, 603
HinfI GANTC 3 cut(s) 67, 452, 663
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 242, 635
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 28, 85
Hpy188III TCNNGA 5 cut(s) 17, 329, 342, 406, 440
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 682, 686
HpyCH4III ACNGT 2 cut(s) 116, 571
HpyCH4V TGCA 6 cut(s) 4, 225, 262, 370, 423, 494
HpyF3I CTNAG 2 cut(s) 25, 33
Hsp92II CATG 5 cut(s) 74, 386, 443, 565, 603
KpnI GGTACC 1 cut(s) 578
KroI GCCGGC 1 cut(s) 595
KroNI GCCGGC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 147, 319
LmnI GCTCC 3 cut(s) 414, 592, 695
LpnPI CCDG 9 cut(s) 30, 314, 397, 413, 483, 490, 525, 609, 618
Lsp1109I GCAGC 3 cut(s) 16, 506, 743
LweI GCATC 4 cut(s) 19, 234, 249, 426
MalI GATC 2 cut(s) 149, 321
MboI GATC 2 cut(s) 147, 319
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 2 cut(s) 157, 539
MluCI AATT 2 cut(s) 347, 747
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 6 cut(s) 34, 38, 226, 389, 583, 656
MroNI GCCGGC 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 108
NaeI GCCGGC 1 cut(s) 597
NdeII GATC 2 cut(s) 147, 319
NgoMIV GCCGGC 1 cut(s) 595
NlaIII CATG 5 cut(s) 74, 386, 443, 565, 603
NlaIV GGNNCC 4 cut(s) 297, 397, 576, 594
PagI TCATGA 1 cut(s) 439
PdiI GCCGGC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 452, 663
PkrI GCNGC 3 cut(s) 6, 496, 733
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspFI CCCAGC 2 cut(s) 7, 399
PspN4I GGNNCC 4 cut(s) 297, 397, 576, 594
PspPI GGNCC 2 cut(s) 376, 395
PstI CTGCAG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 4 cut(s) 174, 427, 525, 576
RsaNI GTAC 4 cut(s) 173, 426, 524, 575
SatI GCNGC 3 cut(s) 5, 495, 732
Sau3AI GATC 2 cut(s) 147, 319
Sau96I GGNCC 2 cut(s) 376, 395
ScaI AGTACT 1 cut(s) 174
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 2 cut(s) 157, 539
SetI ASST 9 cut(s) 9, 26, 49, 163, 218, 405, 648, 700, 736
SfaNI GCATC 4 cut(s) 19, 234, 249, 426
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 156, 404
SmoI CTYRAG 2 cut(s) 156, 404
Sse9I AATT 2 cut(s) 347, 747
SspI AATATT 1 cut(s) 435
StyI CCWWGG 2 cut(s) 299, 656
TaaI ACNGT 2 cut(s) 116, 571
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 347, 747
TatI WGTACW 2 cut(s) 172, 523
TfiI GAWTC 2 cut(s) 452, 663
TscAI CASTG 1 cut(s) 637
TseI GCWGC 3 cut(s) 4, 494, 731
TspDTI ATGAA 4 cut(s) 183, 290, 428, 741
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.