Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019482

Physical Location & Seq

Genomic Coordinates Reverse (-)

77877961 .. 77881687

Gene Structure 3727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCGAGGTGGAGACGAGAGAGACTGAGAACGAGGGTCTGTTTTGCGCCGCAGAAAGAGAGTGAAAGAAAGTCACCTTCAATCTATCTGTTTTGTCGATTTGATGGTGGAGGTCTCCAATCTGACAATTTGTGCTTAGGCACCGAACTAGAACCTGAAGAAGAAGAAGAAGAATCACCCAGACACGCATCTGAAGTTCGAGCGTTGAACTCAATATTCTCACAATGGGATACTCAAGCGGTGGCACTGTGGAATATCAGTGGAGAGCCATGCGGTGGATCAGCCATCAATGGAACCAAATTTGAGAGCCCTTCTAATAACCCAGCCATCATTTGCGACTGTACTTATGCCAGTGGCACCACCTGCCATATTACCCAACTGAGAGTCTATGCTCTAAACAAACGAGTGCTTGCAAAGGAACTTTTGGCTTTGAGATACCTGACCTTCTTTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACACTGCAGGGGACAGTTATGCAGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTCGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTAATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAAGAAGATCTGTGCTCAAGCTATAGACATTTACAGCCTTAATACCTCAGTCTGCATCGGTGATACAACAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCATAAATCTACAATGGTGCCAAGGATTATGGGTGGTTATGATCCGTGTTTGGATGATTATTCAAGAAAATTCTATAATAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATATGTTTTTCCTATATACAAGAAACTCATTGTAGCAGGAAGCAGGAATGAGAATATGGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCATGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGAGCTGCCATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

413

Amino Acids

46.58

Weight (kDa)

6.42

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	159 - 386	2.5e-34	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019482)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018126 RLG00000030195 RLG00000036236
rosa_multiflora	Rmu_sc0001983.1_g000005 Rmu_sc0008232.1_g000007 Rmu_sc0012304.1_g000002 Rmu_sc0015959.1_g000010
rosa_samantha	Rh7BG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	371, 1087
Acc36I	ACCTGC	2 cut(s)	371, 1087
Acc65I	GGTACC	1 cut(s)	1083
AccB1I	GGYRCC	4 cut(s)	140, 356, 772, 1083
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	615
AciI	CCGC	3 cut(s)	50, 239, 273
AclWI	GGATC	2 cut(s)	286, 791
AcsI	RAATTY	2 cut(s)	299, 824
AcuI	CTGAAG	2 cut(s)	177, 213
AfaI	GTAC	3 cut(s)	343, 904, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1096
AgsI	TTSAA	7 cut(s)	81, 208, 723, 819, 933, 1115, 1176
AluBI	AGCT	4 cut(s)	514, 668, 880, 1154
AluI	AGCT	4 cut(s)	514, 668, 880, 1154
Alw21I	GWGCWC	2 cut(s)	664, 1048
Alw26I	GTCTC	3 cut(s)	7, 16, 119
AlwI	GGATC	2 cut(s)	286, 791
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	2 cut(s)	511, 1154
ApoI	RAATTY	2 cut(s)	299, 824
Asp718I	GGTACC	1 cut(s)	1083
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	853, 872
AsuHPI	GGTGA	6 cut(s)	66, 168, 647, 719, 1111, 1194
AvaII	GGWCC	1 cut(s)	872
BaeI	ACNNNNGTAYC	2 cut(s)	1067, 1100
BanI	GGYRCC	4 cut(s)	140, 356, 772, 1083
BanII	GRGCYC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	1027
Bbv12I	GWGCWC	2 cut(s)	664, 1048
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	523, 1141
BccI	CCATC	6 cut(s)	98, 293, 335, 474, 722, 998
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	7, 16, 119
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	3 cut(s)	494, 669, 898
BfuAI	ACCTGC	2 cut(s)	371, 1087
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	3 cut(s)	50, 512, 1155
BlsI	GCNGC	3 cut(s)	51, 513, 1156
Bme18I	GGWCC	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	853, 872
BmiI	GGNNCC	6 cut(s)	142, 295, 358, 774, 874, 1085
BmsI	GCATC	5 cut(s)	197, 526, 711, 726, 903
BpmI	CTGGAG	1 cut(s)	910
Bpu10I	CCTNAGC	2 cut(s)	136, 540
BpuEI	CTTGAG	4 cut(s)	219, 442, 648, 866
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	776, 1079, 1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1096
Bse1I	ACTGG	3 cut(s)	351, 893, 1196
BseDI	CCNNGG	3 cut(s)	776, 1079, 1215
BseGI	GGATG	2 cut(s)	814, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1096
BseMII	CTCAG	5 cut(s)	17, 371, 531, 546, 708
BseNI	ACTGG	3 cut(s)	351, 893, 1196
BseRI	GAGGAG	1 cut(s)	1164
BseXI	GCAGC	2 cut(s)	523, 1141
BseYI	CCCAGC	3 cut(s)	322, 514, 876
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	854
BshNI	GGYRCC	4 cut(s)	140, 356, 772, 1083
BsiHKAI	GWGCWC	2 cut(s)	664, 1048
BslFI	GGGAC	3 cut(s)	514, 858, 1065
BslI	CCNNNNNNNGG	2 cut(s)	275, 1096
BsmAI	GTCTC	3 cut(s)	7, 16, 119
BsmBI	CGTCTC	1 cut(s)	7
BsmFI	GGGAC	3 cut(s)	514, 858, 1065
BsnI	GGCC	1 cut(s)	854
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	311, 664, 1048
Bsp143I	GATC	3 cut(s)	278, 654, 796
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	3 cut(s)	50, 239, 273
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	5 cut(s)	18, 372, 532, 545, 707
BspFNI	CGCG	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	6 cut(s)	142, 295, 358, 774, 874, 1085
BspMAI	CTGCAG	2 cut(s)	498, 902
BspMI	ACCTGC	2 cut(s)	371, 1087
BspPI	GGATC	2 cut(s)	286, 791
BspT107I	GGYRCC	4 cut(s)	140, 356, 772, 1083
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	351, 893, 1196
BssECI	CCNNGG	3 cut(s)	776, 1079, 1215
BssMI	GATC	3 cut(s)	278, 654, 796
BssSI	CACGAG	1 cut(s)	1027
BssT1I	CCWWGG	3 cut(s)	776, 1079, 1215
Bst2BI	CACGAG	1 cut(s)	1027
Bst4CI	ACNGT	5 cut(s)	249, 341, 505, 623, 635
Bst6I	CTCTTC	1 cut(s)	1003
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	6 cut(s)	26, 136, 380, 532, 540, 694
BstDSI	CCRYGG	1 cut(s)	1079
BstF5I	GGATG	2 cut(s)	814, 1009
BstFNI	CGCG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	3 cut(s)	281, 657, 799
BstMAI	GTCTC	3 cut(s)	7, 16, 119
BstMBI	GATC	3 cut(s)	278, 654, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstSFI	CTRYAG	3 cut(s)	494, 669, 898
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	523, 1141
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	1079
BtsCI	GGATG	2 cut(s)	814, 1009
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	5 cut(s)	245, 265, 358, 491, 1189
BveI	ACCTGC	2 cut(s)	371, 1087
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	853, 872
Csp6I	GTAC	3 cut(s)	342, 903, 1084
CviAII	CATG	7 cut(s)	270, 578, 860, 917, 1071, 1080, 1159
CviQI	GTAC	3 cut(s)	342, 903, 1084
DdeI	CTNAG	6 cut(s)	26, 136, 380, 532, 540, 694
DpnI	GATC	3 cut(s)	280, 656, 798
DpnII	GATC	3 cut(s)	278, 654, 796
Eam1104I	CTCTTC	1 cut(s)	1003
EarI	CTCTTC	1 cut(s)	1003
Eco130I	CCWWGG	3 cut(s)	776, 1079, 1215
Eco24I	GRGCYC	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	872
Eco57I	CTGAAG	2 cut(s)	177, 213
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRV	GATATC	1 cut(s)	588
EcoT14I	CCWWGG	3 cut(s)	776, 1079, 1215
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	3 cut(s)	776, 1079, 1215
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	7 cut(s)	273, 581, 863, 920, 1074, 1083, 1162
FaqI	GGGAC	3 cut(s)	514, 858, 1065
FatI	CATG	7 cut(s)	269, 577, 859, 916, 1070, 1079, 1158
FauNDI	CATATG	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	50, 512, 1155
FokI	GGATG	2 cut(s)	821, 1016
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	50, 512, 1155
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	50, 512, 1155
GsaI	CCCAGC	3 cut(s)	326, 518, 880
GsuI	CTGGAG	1 cut(s)	910
HaeIII	GGCC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	7 cut(s)	273, 581, 863, 920, 1074, 1083, 1162
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	5 cut(s)	173, 384, 574, 929, 1222
HphI	GGTGA	6 cut(s)	66, 168, 647, 719, 1111, 1194
Hpy166II	GTNNAC	1 cut(s)	1026
Hpy188I	TCNGA	5 cut(s)	124, 193, 535, 592, 1148
Hpy188III	TCNNGA	5 cut(s)	524, 819, 883, 917, 1115
Hpy8I	GTNNAC	1 cut(s)	1026
HpyAV	CCTTC	4 cut(s)	87, 321, 454, 495
HpyCH4III	ACNGT	5 cut(s)	249, 341, 505, 623, 635
HpyCH4V	TGCA	9 cut(s)	413, 496, 511, 702, 739, 847, 900, 1139, 1162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	6 cut(s)	26, 136, 380, 532, 540, 694
Hsp92II	CATG	7 cut(s)	273, 581, 863, 920, 1074, 1083, 1162
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	1087
Kzo9I	GATC	3 cut(s)	278, 654, 796
LmnI	GCTCC	2 cut(s)	891, 1151
Lsp1109I	GCAGC	2 cut(s)	523, 1141
LweI	GCATC	5 cut(s)	197, 526, 711, 726, 903
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	280, 656, 798
MboI	GATC	3 cut(s)	278, 654, 796
MboII	GAAGA	7 cut(s)	170, 173, 176, 179, 182, 664, 1020
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	311, 664, 1048
MluCI	AATT	3 cut(s)	127, 299, 824
MlyI	GAGTC	2 cut(s)	393, 583
MnlI	CCTC	9 cut(s)	27, 104, 535, 541, 545, 703, 866, 1142, 1215
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	1079
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	3 cut(s)	278, 654, 796
NlaIII	CATG	7 cut(s)	273, 581, 863, 920, 1074, 1083, 1162
NlaIV	GGNNCC	6 cut(s)	142, 295, 358, 774, 874, 1085
NmuCI	GTSAC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	2 cut(s)	371, 1087
PfeI	GAWTC	3 cut(s)	173, 929, 1222
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	51, 513, 1156
PleI	GAGTC	2 cut(s)	392, 582
PpsI	GAGTC	2 cut(s)	392, 582
PspFI	CCCAGC	3 cut(s)	322, 514, 876
PspN4I	GGNNCC	6 cut(s)	142, 295, 358, 774, 874, 1085
PspPI	GGNCC	2 cut(s)	853, 872
PstI	CTGCAG	2 cut(s)	498, 902
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	343, 904, 1085
RsaNI	GTAC	3 cut(s)	342, 903, 1084
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	50, 512, 1155
Sau3AI	GATC	3 cut(s)	278, 654, 796
Sau96I	GGNCC	2 cut(s)	853, 872
SchI	GAGTC	2 cut(s)	393, 583
SduI	GDGCHC	3 cut(s)	311, 664, 1048
SfaNI	GCATC	5 cut(s)	197, 526, 711, 726, 903
SfcI	CTRYAG	3 cut(s)	494, 669, 898
SinI	GGWCC	1 cut(s)	872
SmlI	CTYRAG	4 cut(s)	234, 457, 663, 881
SmoI	CTYRAG	4 cut(s)	234, 457, 663, 881
Sse9I	AATT	3 cut(s)	127, 299, 824
SsiI	CCGC	3 cut(s)	50, 239, 273
SspI	AATATT	2 cut(s)	216, 912
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	776, 1079, 1215
TaaI	ACNGT	5 cut(s)	249, 341, 505, 623, 635
TaqI	TCGA	5 cut(s)	5, 97, 199, 561, 734
TasI	AATT	3 cut(s)	127, 299, 824
TatI	WGTACW	1 cut(s)	341
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	173, 929, 1222
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	5 cut(s)	252, 265, 358, 498, 1196
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	511, 1154
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	767, 905
TspGWI	ACGGA	2 cut(s)	789, 1016
TspRI	CASTG	5 cut(s)	252, 265, 358, 498, 1196
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	2 cut(s)	299, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	866
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.