Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019482

Physical Location & Seq

Genomic Coordinates Reverse (-)

57367479 .. 57369046

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAGCTGGGTAATCCTGAAACCTCAGATGTTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTAATATGCGAAAACTGTAATTTTGATGGTGATACTTGGAGTGAGAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATTCAAGGAGATAGACATTTACAGGCTTTATACCTCAGTCTGCATCGGTGATACAACAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCATACATCTACAATGGTGCCAAGGATTATGGGTGGCTATGATCCATGTCTGGATGATTATTCAAGAAAATTCTATAATAGAGCAGATGTGCAAAAGACCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTTTTCCTATATACAAGAAACTCATTGCAGCAGGAAGCAGGAATGAGAATATGGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGAGCCGACATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGAGAATCTCTGCCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

254

Amino Acids

28.96

Weight (kDa)

5.79

Isoelectric Point (pI)

16.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 226	3.1e-38	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019482)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018126 RLG00000030195 RLG00000036236
rosa_multiflora	Rmu_sc0001983.1_g000005 Rmu_sc0008232.1_g000007 Rmu_sc0012304.1_g000002 Rmu_sc0015959.1_g000010
rosa_samantha	Rh7BG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	2 cut(s)	295, 606
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	3 cut(s)	174, 427, 608
AfiI	CCNNNNNNNGG	1 cut(s)	619
AgsI	TTSAA	6 cut(s)	187, 246, 342, 456, 638, 699
AluBI	AGCT	3 cut(s)	7, 161, 403
AluI	AGCT	3 cut(s)	7, 161, 403
Alw21I	GWGCWC	2 cut(s)	157, 571
AlwI	GGATC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	4, 494
ApoI	RAATTY	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	140, 242, 634, 717
AvaII	GGWCC	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	590, 623
BanI	GGYRCC	2 cut(s)	295, 606
BauI	CACGAG	1 cut(s)	550
Bbv12I	GWGCWC	2 cut(s)	157, 571
BbvI	GCAGC	2 cut(s)	16, 506
BccI	CCATC	4 cut(s)	119, 245, 469, 521
BfmI	CTRYAG	1 cut(s)	421
BfuAI	ACCTGC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	2 cut(s)	5, 495
BlsI	GCNGC	2 cut(s)	6, 496
BmcAI	AGTACT	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	4 cut(s)	297, 397, 608, 676
BmsI	GCATC	3 cut(s)	234, 249, 426
BpmI	CTGGAG	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	141, 389
BsaJI	CCNNGG	3 cut(s)	299, 602, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	416, 719
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	3 cut(s)	299, 602, 738
BseGI	GGATG	3 cut(s)	172, 337, 532
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	39, 231
BseNI	ACTGG	2 cut(s)	416, 719
BseRI	GAGGAG	1 cut(s)	687
BseXI	GCAGC	2 cut(s)	16, 506
BseYI	CCCAGC	2 cut(s)	7, 399
BshNI	GGYRCC	2 cut(s)	295, 606
BsiHKAI	GWGCWC	2 cut(s)	157, 571
BslFI	GGGAC	2 cut(s)	381, 588
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	381, 588
Bsp1286I	GDGCHC	2 cut(s)	157, 571
Bsp143I	GATC	2 cut(s)	147, 319
BspCNI	CTCAG	2 cut(s)	38, 230
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	297, 397, 608, 676
BspMAI	CTGCAG	1 cut(s)	425
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	2 cut(s)	295, 606
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	416, 719
BssECI	CCNNGG	3 cut(s)	299, 602, 738
BssMI	GATC	2 cut(s)	147, 319
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	299, 738
Bst2BI	CACGAG	1 cut(s)	550
Bst4CI	ACNGT	2 cut(s)	116, 603
Bst6I	CTCTTC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	25, 217
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	172, 337, 532
BstKTI	GATC	2 cut(s)	150, 322
BstMBI	GATC	2 cut(s)	147, 319
BstNSI	RCATGY	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	16, 506
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	172, 337, 532
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	610
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	173, 426, 607
CviAII	CATG	6 cut(s)	71, 324, 383, 440, 594, 682
CviJI	RGCY	9 cut(s)	7, 161, 208, 315, 403, 460, 652, 677, 718
CviKI_1	RGCY	9 cut(s)	7, 161, 208, 315, 403, 460, 652, 677, 718
CviQI	GTAC	3 cut(s)	173, 426, 607
DdeI	CTNAG	2 cut(s)	25, 217
DpnI	GATC	2 cut(s)	149, 321
DpnII	GATC	2 cut(s)	147, 319
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	299, 738
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	299, 738
ErhI	CCWWGG	2 cut(s)	299, 738
FaeI	CATG	6 cut(s)	74, 327, 386, 443, 597, 685
FaqI	GGGAC	2 cut(s)	381, 588
FatI	CATG	6 cut(s)	70, 323, 382, 439, 593, 681
Fnu4HI	GCNGC	2 cut(s)	5, 495
FokI	GGATG	3 cut(s)	179, 344, 539
Fsp4HI	GCNGC	2 cut(s)	5, 495
GluI	GCNGC	2 cut(s)	5, 495
GsaI	CCCAGC	2 cut(s)	11, 403
GsuI	CTGGAG	1 cut(s)	433
Hin1II	CATG	6 cut(s)	74, 327, 386, 443, 597, 685
HinfI	GANTC	3 cut(s)	67, 452, 745
HphI	GGTGA	4 cut(s)	140, 242, 634, 717
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	3 cut(s)	28, 85, 671
Hpy188III	TCNNGA	6 cut(s)	17, 329, 342, 406, 440, 638
Hpy8I	GTNNAC	1 cut(s)	549
HpyCH4III	ACNGT	2 cut(s)	116, 603
HpyCH4V	TGCA	8 cut(s)	4, 225, 262, 370, 423, 494, 662, 685
HpyF3I	CTNAG	2 cut(s)	25, 217
Hsp92II	CATG	6 cut(s)	74, 327, 386, 443, 597, 685
KpnI	GGTACC	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	147, 319
LmnI	GCTCC	2 cut(s)	414, 674
Lsp1109I	GCAGC	2 cut(s)	16, 506
LweI	GCATC	3 cut(s)	234, 249, 426
MalI	GATC	2 cut(s)	149, 321
MboI	GATC	2 cut(s)	147, 319
MboII	GAAGA	2 cut(s)	157, 543
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	157, 571
MluCI	AATT	3 cut(s)	118, 182, 347
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	28, 34, 38, 226, 389, 665, 738
MspA1I	CMGCKG	1 cut(s)	7
NdeII	GATC	2 cut(s)	147, 319
NlaIII	CATG	6 cut(s)	74, 327, 386, 443, 597, 685
NlaIV	GGNNCC	4 cut(s)	297, 397, 608, 676
NspI	RCATGY	1 cut(s)	685
PagI	TCATGA	1 cut(s)	439
PaqCI	CACCTGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	452, 745
PkrI	GCNGC	2 cut(s)	6, 496
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspFI	CCCAGC	2 cut(s)	7, 399
PspN4I	GGNNCC	4 cut(s)	297, 397, 608, 676
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	3 cut(s)	174, 427, 608
RsaNI	GTAC	3 cut(s)	173, 426, 607
SatI	GCNGC	2 cut(s)	5, 495
Sau3AI	GATC	2 cut(s)	147, 319
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	157, 571
SetI	ASST	8 cut(s)	9, 26, 49, 163, 218, 405, 624, 730
SfaNI	GCATC	3 cut(s)	234, 249, 426
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	156, 404
SmoI	CTYRAG	2 cut(s)	156, 404
Sse9I	AATT	3 cut(s)	118, 182, 347
SspI	AATATT	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	299, 738
TaaI	ACNGT	2 cut(s)	116, 603
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	118, 182, 347
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	452, 745
TscAI	CASTG	1 cut(s)	719
TseI	GCWGC	2 cut(s)	4, 494
TspDTI	ATGAA	3 cut(s)	183, 290, 428
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.