Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008232.1

Orthogroup ID

OG0019482

Physical Location & Seq

Genomic Coordinates Forward (+)

20192 .. 28315

Gene Structure 8124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008232.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgggatctggtgctggaagtttcctcaaagttctccttaaaaacttcgatgttcttgctgggcctgtgctgggtaatcctgaaacctcagatgctgaggattggagaggtatagtggattatgcttggagtcatgctgtgatatcagacgaaactcacaaagtaatacgcgaaaactgtgattttgatggtgatacttggagtaagaagatcagtgctcaagctgtggatgaagtactaaaacaatacaaggagatagacatttacagcctttatacctcagtctgcatcggtgatacagcaagttcaaatgatggttcgatgcaagtaatgatgatgaagcatacatctacaatgatgccaaggattatgggtggctatgatccgtgtctggatgattattcaagaaaattctataacagagcagatgtgcaaaaggccctccaagttagtaatggtccccagctcaagaactggaacatctgcagtaccaaaatatttcatgagtgggttgattcaaagccatctgttcttcctatatacaagaaactcattgcaccaggaagcaggaatgagagtagaggtgtacagaggagccggcatgcagttgacaggtttaaagaccataaaagttgcaaccacatgattgccactgcaatggatggggatgatacattgatagctcctcaagtttctctaaacttaagcagcttgggttatatattcctcggaagcagaggaatccaaagaaagagaagactatctttgttgggaaattattgtgattttcgctctgctcgatctacgacgtcgagtatagattgtgtgatcttaaagaagcttagcaaaagtcctcaccacgaggcacaaagaatcccgcgacaaggttggtgctctcctcgtccacaattgctccaaagaagtcaggtcgagggacaccctcgactaccgcacccgaacggtgacaagatagccaatgttgccaccactggcaatattgccattgatgaagagttcacgcccctcgtcatcccagaggatgctaggatcgatgaacgactccacatccttacgctcaacagcgacaactataggaggcacctggctacatcgattgcgaggactgagcagcagcttcgcaatttcaatagacaaatgaacgagaatgctcagaaagctaaagagcaaagggagcaacgtgctcgagaagctgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

405

Amino Acids

45.8

Weight (kDa)

8.78

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019482)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018126 RLG00000030195 RLG00000036236
rosa_multiflora	Rmu_sc0001983.1_g000005 Rmu_sc0008232.1_g000007 Rmu_sc0012304.1_g000002 Rmu_sc0015959.1_g000010
rosa_samantha	Rh7BG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	1098
AccII	CGCG	2 cut(s)	171, 880
AciI	CCGC	2 cut(s)	878, 950
AclWI	GGATC	3 cut(s)	13, 377, 1055
AcsI	RAATTY	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	3 cut(s)	237, 490, 588
AfiI	CCNNNNNNNGG	2 cut(s)	71, 884
AflII	CTTAAG	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	309, 405, 519, 1147
AjnI	CCWGG	2 cut(s)	559, 1101
AluBI	AGCT	8 cut(s)	224, 466, 683, 711, 841, 1135, 1178, 1211
AluI	AGCT	8 cut(s)	224, 466, 683, 711, 841, 1135, 1178, 1211
Alw21I	GWGCWC	3 cut(s)	220, 896, 1204
AlwI	GGATC	3 cut(s)	13, 377, 1055
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	1203
AoxI	GGCC	2 cut(s)	62, 438
ApeKI	GCWGC	3 cut(s)	708, 1129, 1132
ApoI	RAATTY	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	62, 439, 458
AsuHPI	GGTGA	4 cut(s)	203, 305, 848, 974
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	1098
BauI	CACGAG	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	763
Bbv12I	GWGCWC	3 cut(s)	220, 896, 1204
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	720, 1141, 1144
BccI	CCATC	4 cut(s)	182, 308, 532, 656
BcgI	CGANNNNNNTGC	6 cut(s)	38, 72, 1118, 1152, 1184, 1218
BciT130I	CCWGG	2 cut(s)	561, 1103
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	2 cut(s)	484, 1090
BfrI	CTTAAG	1 cut(s)	703
BisI	GCNGC	3 cut(s)	709, 1130, 1133
BlpI	GCTNAGC	1 cut(s)	842
BlsI	GCNGC	3 cut(s)	710, 1131, 1134
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	561, 1103
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	1203
BmgT120I	GGNCC	3 cut(s)	62, 439, 458
BmiI	GGNNCC	3 cut(s)	460, 596, 1100
BmrFI	CCNGG	2 cut(s)	561, 1103
BmsI	GCATC	5 cut(s)	82, 297, 312, 348, 1030
BpiI	GAAGAC	1 cut(s)	763
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	842
BpuEI	CTTGAG	3 cut(s)	204, 452, 672
Bsa29I	ATCGAT	2 cut(s)	1050, 1112
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	362, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 884
Bse118I	RCCGGY	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	479, 994
Bse3DI	GCAATG	2 cut(s)	552, 663
BseBI	CCWGG	2 cut(s)	561, 1103
BseCI	ATCGAT	2 cut(s)	1050, 1112
BseDI	CCNNGG	2 cut(s)	362, 727
BseGI	GGATG	7 cut(s)	235, 400, 667, 673, 1029, 1045, 1065
BseLI	CCNNNNNNNGG	2 cut(s)	71, 884
BseMI	GCAATG	2 cut(s)	552, 663
BseMII	CTCAG	5 cut(s)	87, 102, 294, 1116, 1184
BseNI	ACTGG	2 cut(s)	479, 994
BseRI	GAGGAG	3 cut(s)	607, 675, 888
BseXI	GCAGC	3 cut(s)	720, 1141, 1144
BseYI	CCCAGC	3 cut(s)	59, 70, 462
Bsh1236I	CGCG	2 cut(s)	171, 880
BshFI	GGCC	2 cut(s)	64, 440
BshNI	GGYRCC	1 cut(s)	1098
BshVI	ATCGAT	2 cut(s)	1050, 1112
BsiHKAI	GWGCWC	3 cut(s)	220, 896, 1204
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	598
BslFI	GGGAC	2 cut(s)	444, 948
BslI	CCNNNNNNNGG	2 cut(s)	71, 884
BsmFI	GGGAC	2 cut(s)	444, 948
BsmI	GAATGC	1 cut(s)	1171
BsnI	GGCC	2 cut(s)	64, 440
BsoBI	CYCGRG	1 cut(s)	1203
Bsp1286I	GDGCHC	3 cut(s)	220, 896, 1204
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
Bsp1720I	GCTNAGC	1 cut(s)	842
BspACI	CCGC	2 cut(s)	878, 950
BspANI	GGCC	2 cut(s)	64, 440
BspCNI	CTCAG	5 cut(s)	88, 101, 293, 1117, 1183
BspDI	ATCGAT	2 cut(s)	1050, 1112
BspFNI	CGCG	2 cut(s)	171, 880
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	460, 596, 1100
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	3 cut(s)	13, 377, 1055
BspT107I	GGYRCC	1 cut(s)	1098
BspTI	CTTAAG	1 cut(s)	703
BsrDI	GCAATG	2 cut(s)	552, 663
BsrFI	RCCGGY	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	479, 994
BssAI	RCCGGY	1 cut(s)	597
BssECI	CCNNGG	2 cut(s)	362, 727
BssMI	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
BssNI	GRCGYC	1 cut(s)	809
BssSI	CACGAG	1 cut(s)	860
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	2 cut(s)	561, 1103
Bst4CI	ACNGT	2 cut(s)	179, 962
Bst6I	CTCTTC	1 cut(s)	1005
BstACI	GRCGYC	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	703
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	599, 603
BstDEI	CTNAG	6 cut(s)	88, 96, 280, 842, 1125, 1170
BstF5I	GGATG	7 cut(s)	235, 400, 667, 673, 1029, 1045, 1065
BstFNI	CGCG	2 cut(s)	171, 880
BstKTI	GATC	6 cut(s)	8, 213, 385, 803, 831, 1050
BstMBI	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
BstMWI	GCNNNNNNNGC	4 cut(s)	980, 1175, 1192, 1208
BstNI	CCWGG	2 cut(s)	561, 1103
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	559, 1101
BstSFI	CTRYAG	2 cut(s)	484, 1090
BstUI	CGCG	2 cut(s)	171, 880
BstV1I	GCAGC	3 cut(s)	720, 1141, 1144
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	5
Bsu15I	ATCGAT	2 cut(s)	1050, 1112
BsuRI	GGCC	2 cut(s)	64, 440
BsuTUI	ATCGAT	2 cut(s)	1050, 1112
BtsCI	GGATG	7 cut(s)	235, 400, 667, 673, 1029, 1045, 1065
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	220, 651, 987
Cac8I	GCNNGC	2 cut(s)	599, 603
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	62, 439, 458
ClaI	ATCGAT	2 cut(s)	1050, 1112
Csp6I	GTAC	3 cut(s)	236, 489, 587
CviAII	CATG	4 cut(s)	134, 503, 602, 643
CviQI	GTAC	3 cut(s)	236, 489, 587
DdeI	CTNAG	6 cut(s)	88, 96, 280, 842, 1125, 1170
DpnI	GATC	6 cut(s)	7, 212, 384, 802, 830, 1049
DpnII	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
DraI	TTTAAA	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	1203
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	559, 1101
EcoRV	GATATC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	4 cut(s)	137, 506, 605, 646
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 748, 780
FaqI	GGGAC	2 cut(s)	444, 948
FatI	CATG	4 cut(s)	133, 502, 601, 642
FauI	CCCGC	1 cut(s)	885
Fnu4HI	GCNGC	3 cut(s)	709, 1130, 1133
FokI	GGATG	7 cut(s)	242, 407, 674, 680, 1016, 1052, 1052
Fsp4HI	GCNGC	3 cut(s)	709, 1130, 1133
FspBI	CTAG	1 cut(s)	1044
GluI	GCNGC	3 cut(s)	709, 1130, 1133
GsaI	CCCAGC	3 cut(s)	63, 74, 466
HaeIII	GGCC	2 cut(s)	64, 440
HapII	CCGG	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	137, 506, 605, 646
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	5 cut(s)	130, 515, 741, 873, 1059
HpaII	CCGG	1 cut(s)	598
HphI	GGTGA	4 cut(s)	203, 305, 848, 974
Hpy166II	GTNNAC	4 cut(s)	587, 610, 905, 1017
Hpy188I	TCNGA	4 cut(s)	91, 148, 731, 1173
Hpy188III	TCNNGA	6 cut(s)	80, 392, 405, 469, 503, 1205
Hpy8I	GTNNAC	4 cut(s)	587, 610, 905, 1017
Hpy99I	CGWCG	2 cut(s)	811, 814
HpyCH4III	ACNGT	2 cut(s)	179, 962
HpyCH4IV	ACGT	2 cut(s)	809, 1198
HpyCH4V	TGCA	8 cut(s)	288, 325, 433, 486, 557, 605, 636, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	980, 1175, 1192, 1208
HpyF3I	CTNAG	6 cut(s)	88, 96, 280, 842, 1125, 1170
HpySE526I	ACGT	2 cut(s)	809, 1198
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	4 cut(s)	137, 506, 605, 646
KroI	GCCGGC	1 cut(s)	597
KroNI	GCCGGC	1 cut(s)	599
Kzo9I	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
LmnI	GCTCC	4 cut(s)	594, 688, 918, 1192
Lsp1109I	GCAGC	3 cut(s)	720, 1141, 1144
LweI	GCATC	5 cut(s)	82, 297, 312, 348, 1030
MaeI	CTAG	1 cut(s)	1044
MaeII	ACGT	2 cut(s)	809, 1198
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	6 cut(s)	7, 212, 384, 802, 830, 1049
MboI	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
MboII	GAAGA	4 cut(s)	220, 524, 768, 1022
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	3 cut(s)	220, 896, 1204
MluCI	AATT	4 cut(s)	410, 775, 908, 1141
MlyI	GAGTC	2 cut(s)	139, 1053
MroNI	GCCGGC	1 cut(s)	597
MseI	TTAA	4 cut(s)	39, 618, 704, 833
MslI	CAYNNNNRTG	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	1 cut(s)	598
MspR9I	CCNGG	2 cut(s)	561, 1103
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	1171
MvaI	CCWGG	2 cut(s)	561, 1103
MvnI	CGCG	2 cut(s)	171, 880
MwoI	GCNNNNNNNGC	4 cut(s)	980, 1175, 1192, 1208
NaeI	GCCGGC	1 cut(s)	599
NdeII	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
NgoMIV	GCCGGC	1 cut(s)	597
NlaIII	CATG	4 cut(s)	137, 506, 605, 646
NlaIV	GGNNCC	3 cut(s)	460, 596, 1100
NmuCI	GTSAC	1 cut(s)	962
NspI	RCATGY	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	1203
PagI	TCATGA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	796
PctI	GAATGC	1 cut(s)	1171
PdiI	GCCGGC	1 cut(s)	599
PfeI	GAWTC	3 cut(s)	515, 741, 873
PkrI	GCNGC	3 cut(s)	710, 1131, 1134
PleI	GAGTC	2 cut(s)	138, 1053
PpsI	GAGTC	2 cut(s)	138, 1053
Psp6I	CCWGG	2 cut(s)	559, 1101
PspFI	CCCAGC	3 cut(s)	59, 70, 462
PspGI	CCWGG	2 cut(s)	559, 1101
PspN4I	GGNNCC	3 cut(s)	460, 596, 1100
PspPI	GGNCC	3 cut(s)	62, 439, 458
PstI	CTGCAG	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	3 cut(s)	237, 490, 588
RsaNI	GTAC	3 cut(s)	236, 489, 587
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	4 cut(s)	39, 618, 704, 833
SatI	GCNGC	3 cut(s)	709, 1130, 1133
Sau3AI	GATC	6 cut(s)	5, 210, 382, 800, 828, 1047
Sau96I	GGNCC	3 cut(s)	62, 439, 458
ScaI	AGTACT	1 cut(s)	237
SchI	GAGTC	2 cut(s)	139, 1053
ScrFI	CCNGG	2 cut(s)	561, 1103
SduI	GDGCHC	3 cut(s)	220, 896, 1204
SfaNI	GCATC	5 cut(s)	82, 297, 312, 348, 1030
SfcI	CTRYAG	2 cut(s)	484, 1090
Sfr274I	CTCGAG	1 cut(s)	1203
SinI	GGWCC	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	1203
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	5 cut(s)	219, 467, 687, 703, 1203
SmoI	CTYRAG	5 cut(s)	219, 467, 687, 703, 1203
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	4 cut(s)	410, 775, 908, 1141
SsiI	CCGC	2 cut(s)	878, 950
SspI	AATATT	2 cut(s)	498, 997
SspMI	CTAG	1 cut(s)	1044
StyD4I	CCNGG	2 cut(s)	559, 1101
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	179, 962
TaiI	ACGT	2 cut(s)	812, 1201
TaqI	TCGA	9 cut(s)	48, 320, 799, 812, 930, 943, 1050, 1112, 1204
TasI	AATT	4 cut(s)	410, 775, 908, 1141
TatI	WGTACW	2 cut(s)	235, 586
TfiI	GAWTC	3 cut(s)	515, 741, 873
Tru1I	TTAA	4 cut(s)	39, 618, 704, 833
Tru9I	TTAA	4 cut(s)	39, 618, 704, 833
TscAI	CASTG	3 cut(s)	220, 658, 994
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	3 cut(s)	708, 1129, 1132
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	6 cut(s)	246, 353, 491, 1023, 1068, 1172
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	3 cut(s)	220, 658, 994
Vha464I	CTTAAG	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	1203
XspI	CTAG	1 cut(s)	1044
ZraI	GACGTC	1 cut(s)	810
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.